Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0358 ATGGGTTGTATATGCCCTAGAGGAAGATCTTCGAATGATTATGTTGCAGAGAGCCATGTGAAGAAGGCGAAGAAATCCTTGAAGGGCATTTCACGGAGGGACCAGAGAGTTCAGGTGGAAGTCGACGGCGGTGGTGGTGGCGGTGGTGGAGGAAACGATGCTACGACGAGATTGATAGCGCCGGAAGAGAGGGAGACGAATGCAGAAACGTCGACGACAGGAAATGCAGGGAATTCGCATGACGAGGGACAAGAAGGACAACCTAGGATGATGACTAGGATAGGTAGTATGAACAGAGGGGAAAGAGGAGCTCAAGTTCTTGCTGGATGGCCTTCATGGCTCACTGCTGTTGCAGGAGAAGCCATTAGTGGTTGGATTCCTCGAAGAGCAGATTCGTTTGAGAAGTTGGAGAAGATTGGGCAAGGAACGTACAGCAGCGTGTACAAAGCTCGAGATCTGGAAACAAATAAAATTGTTGCATTAAAGAAGGTTCGATTTGCAAATATGGATCCAGAAAGTGTTGGATTCATGGCAAGAGAGATAATTGTGCTTAGAAGGCTGGATCATCCTAATGTGATGAAGCTTGAAGGCATCATAACCTCTAGGGTTTCTGGAAGCTTGTATCTTATCTTTGAATACATGGAGCATGATCTCACTGGCCTTGCTGCAAATTCTGCCATCAAGTTTTCTGAATCTCAGATAAAATGCTACATGCAGCAGCTGCTGAGGGGTCTGGAGCACTGTCACAAGCGGGGGGTGCTGCATCGCGACATAAAGGGGTCGAACCTTCTGGTGGACAACAAGGGCAACCTGAAGATCGCAGACTTTGGGCTAGCCACGGTGCTGGAGGGTCAAGCCCTGACGAGCCGCGTGGTAACCTTGTGGTACCGATCCCCTGAACTTTTACTTGGGGCTACGCATTATGGCGTTGCTATTGACTTGTGGAGTACCGGTTGCATTCTTGCAGAGTTGTTCGCTGGCAAGCCCATCATGCCCGGACGAACCGAGGTGGAACAACTCCATAAGATCTTCAAGCTGTGTGGATCGCCTTCTGAGATGTACTGGAAGAAGTCGAAGCTTCCAGATGCAACCATCTTCAAACCTCAACAGCCTTACAAGCGTGTTGTCGCAGAGACGTTCAAGGATTTTCCAGCGTCCGCACTCAAGCTTTTGGATGTCCTTCTGGCCATAGAACCTGAGGATCGAGGAACTGCTTCCTCTGCACTTCAAAGCGAGTTCTTTACAACAAAGCCGCTCCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCGAGTAAGGAGTTTACTATCAAGCTTCGAGAAGAGGAAACTGGAAGAGGAAGGGGTGCTAACAAAAAAGGACATGAACAAGAAGCAGTGAAGAGTTCCAGAAAGTCTAAAGCTGCGCCACCTCTTGAAGGAAAGTCCGAGTTACCGGGACCCCCAGAGAGGAAGCAAGCTCAGGCGAATCCCAAGCGCACCGTGGAGAACCACTCTCATGAGAAGAACACCCTCCTCATCGATACCGCAAGATCAACGAGATCATCCAAACTCTTCTCTCATGCAGGCCAATCGACGCACCAAAGTGCGTACGTATTGACGCGTGCCACGGAAGAAGAGGTGTTTGGATCAACAGCGAGAAAACAGAGATCGTACTGGAGCAGCACAAACGCCGTGCGTCTGTCGAAGTTTTCTAGTTCAGTGGCGGTCGGCGGCGGCTCGCGGCTGGACATGAGCGGCGGAGGAAACTCTTCGCTTTGGCGAGACGATCGGTTTGGCGCGAGATATAGGCATCACGGCGGAAGAGAAATCGACCCGTTGCAGGACGGATCCAAGTCTGCTCAGAAGAAGAGTTTCCATCCTTTTCTCACTAAGCCTTCCATGGGCTATGCTTCTAAAAGTGGCAACTTCCACTTTTCTGGACCATTGGTGTCTGCAGGGGGGAATCTTGAACAAATGCTTAAGCATCATGAAAGACAAATCCAGCAGGCTGTACGCAAAGTTTGTTTGGATAAGATAAACTTTTGTGCAGCTGAAGCTGATTCTGCAAATTGTTCCATTACTTGCTTAACCATACTACTATCTCTGTGGTTTATGGAACTTCTTGCTCTTGGCTTGTGA 2121 0.4932 MGCICPRGRSSNDYVAESHVKKAKKSLKGISRRDQRVQVEVDGGGGGGGGGNDATTRLIAPEERETNAETSTTGNAGNSHDEGQEGQPRMMTRIGSMNRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLEKIGQGTYSSVYKARDLETNKIVALKKVRFANMDPESVGFMAREIIVLRRLDHPNVMKLEGIITSRVSGSLYLIFEYMEHDLTGLAANSAIKFSESQIKCYMQQLLRGLEHCHKRGVLHRDIKGSNLLVDNKGNLKIADFGLATVLEGQALTSRVVTLWYRSPELLLGATHYGVAIDLWSTGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEMYWKKSKLPDATIFKPQQPYKRVVAETFKDFPASALKLLDVLLAIEPEDRGTASSALQSEFFTTKPLPCDPSTLPKYPPSKEFTIKLREEETGRGRGANKKGHEQEAVKSSRKSKAAPPLEGKSELPGPPERKQAQANPKRTVENHSHEKNTLLIDTARSTRSSKLFSHAGQSTHQSAYVLTRATEEEVFGSTARKQRSYWSSTNAVRLSKFSSSVAVGGGSRLDMSGGGNSSLWRDDRFGARYRHHGGREIDPLQDGSKSAQKKSFHPFLTKPSMGYASKSGNFHFSGPLVSAGGNLEQMLKHHERQIQQAVRKVCLDKINFCAAEADSANCSITCLTILLSLWFMELLALGL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0358 706 MobiDBLite consensus disorder prediction 25 88 - -
Dere10g0358 706 FunFam probable serine/threonine-protein kinase At1g54610 216 454 - -
Dere10g0358 706 SMART serkin_6 133 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0358 706 MobiDBLite consensus disorder prediction 489 507 - -
Dere10g0358 706 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Dere10g0358 706 MobiDBLite consensus disorder prediction 65 82 - -
Dere10g0358 706 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Dere10g0358 706 Gene3D Transferase(Phosphotransferase) domain 1 216 452 - -
Dere10g0358 706 ProSiteProfiles Protein kinase domain profile. 133 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0358 706 MobiDBLite consensus disorder prediction 25 39 - -
Dere10g0358 706 MobiDBLite consensus disorder prediction 441 508 - -
Dere10g0358 706 Pfam Protein kinase domain 133 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0358 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Dere10g0358 706 CDD STKc_CDK9_like 133 414 - -
Dere10g0358 706 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Dere10g0358 706 SUPERFAMILY Protein kinase-like (PK-like) 127 422 IPR011009 -
Dere10g0358 706 MobiDBLite consensus disorder prediction 441 471 - -
Dere10g0358 706 PANTHER CELL DIVISION PROTEIN KINASE 131 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0358 Dere-ChrDere10 6352144 6361372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0358 125 473 Core Cell Cycle Gene Families AT5G10270 50.674 3.77e-117 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere10g0358 Pkinase 2.4e-70 CL0016