Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0333 ATGGAAACAGTAAAGTCGTTTGGTCAACCACTATTCAGAAAAAGGTATTTAAATAAGGAAGGAAAGCCGAGGAATCCATTGTTGAAGTTAAACAGGATAAGAGATTTTATCAGCCTCTGGTTGAGTTACCCTATGAGAACAGCGCATGACAGCAAACTTAAAGCTTGGATTCATGAAGTTTCAAACATTCATGGTTTGATAGAAGAAAAGTACCGTCTAATGCGAGAGAACCCGCTTCGATATGTGGAAGGACTTCTACCAGTAGAAATGATAGTGGAGATAGAAGCAGGTGGGAATTCCTTATTTGCTGACGAAAATGAGATACCAAAAGCTATTCTCAATTTAGCTGCAGATCTTGCTGTTGATCAACTGGTTCAAACTTTACTTTCTGGGGATGATCATGTACGGAACATTCACTATGTCATGTTATCTACCAGAAATGGAGTTGAGCAAAGAGAAGTTTTTGAAAAAATAAAAGTGCTCTCGAAAGACAAGGACAACAAGTCCCGTTTTAATGAAATCTTTCACAGAGTCTTGTGTGTTGACGTCTCTATGCATCAAAGCCAAGGAGAGATCACAGTTCTACAAGAAATCCGTCGGCAGCTTCGGTGTCAACTTCAGCTTCAACTTCCAATGTCCAAGTTGTATGAGCTCCAACTCCAAGGCATGATGATGAGCAAGAAATATTTAGTTCTTCTGTTGGATGGGGATGCTGAGAAAGCTATAGATCTGCGGAAAGTGGTTTTGCCCACATATATACACGATGCAATTATGGTGTCGATTACCGCTGAATCTTCAAAGCAGGCAAATGATGACATTACACTGGTAATGGATCTGAAAATCAGCACAGAGGATCATTTGTTGCCATGGGAGGTATTCTGTCAAAATGTAGCCAATGAGCTTGTGTATTCATCTTCTGCCATCCAGAGAATTGCAGTGCGTATAGTCGAAGAATGTGGTGGCCATCTTTTGGCCATTGTCCTTGTGGCAAAGTCATTGAAGAATGTCAAAGATATTAAACTCTGGGAACTTGCGCTAATTAAATTGCGCTACCTTAATCCTCTCAGTGACTTGGATATGTTTCAGAGTGTAAGCAGAGTCATGGTTAATACATTCATAAACTTCATCTGGAATGATATAACTCAAACGCAAAAGAGTTGCCTCACAAGTTGTTTATTCATCTCTGATATCAAAATTGGTAAGCTTCATTTTGAATTGATGTACCATTGGACTTCTTATCAGTTAATTGATGATGGAAAAGCTGCGCACATCCTAAGAGAGCTCGTAGAACGCTCTATCTTATTACAACTTCAAGGCTTTAAAGGCAGGTATATCCAGTTGCCAGAAGAAACCTATGCTATTTTGCATTCGTTGAACACTTTAGACCCTTTGTTCATAAAGAAATCTGGGTTAGGGTTGACTGAGCCACCAGACGATGAGCTATGGCAGAGTGCAGTACATATGGAACTTATAAATAATAGATTATGCGAGCTACCTTTGTCTCCAAACAGCCTTGAACTTAAAGTGTTGAGGTTGCAAGGTAATGCTGATTTAACAAGCATCCCACCTATGTTTTTCTTTAACATGCCTTTGCTTCAGATTATAGACTTATCTAATACTAGTATAAGAGAACTACCAAACTCTTTGTTTGAGTTAAAGCATCTCAGAGAACTATATTTGAAAGGTTGTGAATGCTTCATGAAATTATCACCAAAGATTGGAAAATTGAATAAACTTGAGAAGCTTGATCTTGACGGTACTCAAATCATACATTTGCCAGAAGAGATGCAAGAGTTGACCAGTCTCCAAAGCTTGACCCTTTGCTTCTATGAATATCGTGGCAAGAAAAACAAGCAATATACATGTTCAACAATTATTCCTCATGGGGTAATTTCAAAACTCAAGTGCTTAAAACATTTAAGCATTGATGTGAACCCTGATGATGAGCGGTGGTATGAGAATGTACCAGGTATTCTTCCAGAAATATTGGGATTAAAGAGTTTGATAACTCTTAGCTTATATATCCCGCAGCTGGAACTTTTGAAGCTTATACCAGATTATATTTCTGATCTTGATTTTAGATTTATTGTTGGGAAGCATATGCAAAGGATCATATCTGGTAAACCACCCACATATGAAGCAAAATTTATGCAAAGTGATTATAGGTTAAAGTTTGTAAAAGGTGTTGATATTCCTGATGAAATTAAGAAGCTTGTTCGACACAGTAAGGCCTTATTCCTAGATCGACATGTGACAATCAAGAATCTCTCTGAATTTGGACTGATGAATTTAGAGCAACTGCGAGTATGCATGTTGGCAGAATGTAAAGAAATGCAAACAGTGGTTGATGGAAGACACTCAAATAATGACAATGATGTGTTGTCGCATTTGTTATACTTGAGTGTATCGTACATGTTGAATTTAAAAAGCATATGGGATGGGCCAGCGCCACCTCGTTGCTTTTTGGGTATGCTTAAGTCCCTAGTATTGCACAATTGTCCTAAGTTAACAACTGTGTTCACCTTGGAGTTTTTGGGCAATCTTTCACTTTTAAAGGAGCTTATAGTAAATAATTGTCCCAAAGTAAGAACCTTGATCAGTGATAAATCACGCAGACAAAAAGCAGAGATTTTCCTCCCAAAATTGAAAAAGCTTTTACTTCTCCATCTCCCCAAGTTAATCAACATTTCCAATGGATTTCACATGGGCCCATGTTTAGAGAATATTGGAATTTATGACTGCCCAAAGTTGCAAAGCCTTTCTATGATGGAACTGTCAAGCCAAAATCTAAGGGTCATAAAAGGAGAATCCAAGTGGTGGGCTACGCTGAAATGGCACGAAGGAGAATGGGGAAAAGCTGGTCGACCATCTAAGTTTGATTGCTTCTTTTCCTCGATTAATGTACAAGTGGACATAATGACTCAATTAGGAGTAGAAGATGAGGTTGAAGATGGTCAAGGTAATTCAATATCTTTATTTGATTGTAGGGAAGTGGGTGATCCATTACAGCCTGCTGGTAAGAGGATCCTCAAAGACCAAAAGCAGAGTGCAAGTGCTGACAGGAGATTGACTAATTCGGTGTCAAAAGAAACATCTGAAGGGGTACGGACTTTAGAGAATGGATACATTTGGAGGAAATATGGCCAGAAAGACATTGTTGGAGCCAAATTTCCAAGAAGCTATTACAGATGTGCTCATGGTCATTGCTCCGCGAAAAAGCAAGTGCAAAGATCTGAGGTAGACCCAACTATTTACGAAACCAGTTACGAGGGAAGACACACCTGCACACACGCCTCCAGTGACGACGACTTGTTTGTAAGCAGGCCCTCCAGTGCACTTCTTGAGTCATTTTCTTCCATGGATGACTCTGTTTTCACTCAAGATATGTACTTAAAGTTTTCACTGCACAAAGCTGACACACTTCATCCTTTTCGCTGA 3438 0.3906 METVKSFGQPLFRKRYLNKEGKPRNPLLKLNRIRDFISLWLSYPMRTAHDSKLKAWIHEVSNIHGLIEEKYRLMRENPLRYVEGLLPVEMIVEIEAGGNSLFADENEIPKAILNLAADLAVDQLVQTLLSGDDHVRNIHYVMLSTRNGVEQREVFEKIKVLSKDKDNKSRFNEIFHRVLCVDVSMHQSQGEITVLQEIRRQLRCQLQLQLPMSKLYELQLQGMMMSKKYLVLLLDGDAEKAIDLRKVVLPTYIHDAIMVSITAESSKQANDDITLVMDLKISTEDHLLPWEVFCQNVANELVYSSSAIQRIAVRIVEECGGHLLAIVLVAKSLKNVKDIKLWELALIKLRYLNPLSDLDMFQSVSRVMVNTFINFIWNDITQTQKSCLTSCLFISDIKIGKLHFELMYHWTSYQLIDDGKAAHILRELVERSILLQLQGFKGRYIQLPEETYAILHSLNTLDPLFIKKSGLGLTEPPDDELWQSAVHMELINNRLCELPLSPNSLELKVLRLQGNADLTSIPPMFFFNMPLLQIIDLSNTSIRELPNSLFELKHLRELYLKGCECFMKLSPKIGKLNKLEKLDLDGTQIIHLPEEMQELTSLQSLTLCFYEYRGKKNKQYTCSTIIPHGVISKLKCLKHLSIDVNPDDERWYENVPGILPEILGLKSLITLSLYIPQLELLKLIPDYISDLDFRFIVGKHMQRIISGKPPTYEAKFMQSDYRLKFVKGVDIPDEIKKLVRHSKALFLDRHVTIKNLSEFGLMNLEQLRVCMLAECKEMQTVVDGRHSNNDNDVLSHLLYLSVSYMLNLKSIWDGPAPPRCFLGMLKSLVLHNCPKLTTVFTLEFLGNLSLLKELIVNNCPKVRTLISDKSRRQKAEIFLPKLKKLLLLHLPKLINISNGFHMGPCLENIGIYDCPKLQSLSMMELSSQNLRVIKGESKWWATLKWHEGEWGKAGRPSKFDCFFSSINVQVDIMTQLGVEDEVEDGQGNSISLFDCREVGDPLQPAGKRILKDQKQSASADRRLTNSVSKETSEGVRTLENGYIWRKYGQKDIVGAKFPRSYYRCAHGHCSAKKQVQRSEVDPTIYETSYEGRHTCTHASSDDDLFVSRPSSALLESFSSMDDSVFTQDMYLKFSLHKADTLHPFR 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0333 1145 Coils Coil 1144 1145 - -
Dere10g0333 1145 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 141 931 - -
Dere10g0333 1145 SMART WRKY_cls 1038 1097 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0333 1145 Gene3D - 289 375 IPR042197 -
Dere10g0333 1145 SMART LRR_typ_2 529 552 IPR003591 -
Dere10g0333 1145 SMART LRR_typ_2 576 599 IPR003591 -
Dere10g0333 1145 Gene3D Ribonuclease Inhibitor 438 704 IPR032675 -
Dere10g0333 1145 Pfam NB-ARC domain 167 349 IPR002182 GO:0043531
Dere10g0333 1145 Gene3D Ribonuclease Inhibitor 722 938 IPR032675 -
Dere10g0333 1145 SUPERFAMILY L domain-like 458 923 - -
Dere10g0333 1145 ProSiteProfiles WRKY domain profile. 1033 1093 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0333 1145 Gene3D WRKY domain 1023 1098 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere10g0333 1145 Pfam WRKY DNA -binding domain 1040 1095 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0333 1145 SUPERFAMILY WRKY DNA-binding domain 1035 1096 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere10g0333 1145 Pfam Leucine rich repeat 507 563 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0333 Dere-ChrDere10 5948535 5952303 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0333 1042 1098 WRKY Transcription Factor Family AT4G11070 63.333 4.37e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere10g0333 NB-ARC 1.6e-08 CL0023