Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0315 ATGGCGTATGTGGCCGCAAATCAGACATCTGGTGGAAATCATCCTGGGCCAACCAACGATGAATTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACCCTTCCTCGTGAAGGGGAGCGAGTTTATTACTTCCCACAAGGTCACATGGAACAGCTTGAGGCATCTATGCATCAGGGGTCAGAGCAGCATATGCCTTCCTTCAACCTGCCTTCTAAAATTTTATGCAAAGTGGTCAATGTTCATCTCCGGGCTGAACCTGAGACTGATGAAGTATATGCACAGATAACTTTGCTTCCAGAACAAGATCAAAGTGAGGTGAGTAGCCCAGATGAGCCTCTGCCAGAAGCTCCAAGGTGCACTGTCCATTCATTTTGCAAGACACTTACTGCATCTGACACCAGTACCCATGGAGGATTTTCTGTTCTTCGAAGACATGCAGATGAATGTTTGCCACCCTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCTAGGCGCCACCTACTGACTACTGGGTGGAGTATCTTTGTCAGCTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCCTGAGAGGTGAGAATGGGGAGCTGCGTGTCGGAGTTAGGAGGCTCATGAGACAGCAAAATAACATGCCATCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCTACTGCATCTCATGCCATTTCAACTGGAACTCTGTTTTCTGTATTTTACAAACCCAGAACAAGCCGATCAGAGTTTATTGTGAGCGTCAACAAGTATCTTGAAGCTAGGGGTCATAAGTTTTCTGTTGGGATGCGATTCAAGATGAGGTTCGAGGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACGATTGTAGGTGTTGGAGATAATATGTCACCCGTCTGGGCTAATTCTGAGTGGCGCTCATTAAAGGTGCAATGGGATGAACCGTCTTCGATCTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTTAATACCACTCCTGCAAATTCCCAACCAACCCAAAGAAATAAGAGGGCACGCCCTCCCCTTCTACCGTCATCAATGCCCGATTCTTCCCATGGTGTGTGGAAATCACCGGTTAAATCTCCACCTTTCCCTTATCGCGATCCTCAACATGGACGGGACCTCTATTCATCATCCAAGTTCAATTCTACTCCTACTAACTTTCTTGGTATTGGTGGGAATAGCCCCCTGGGGGCTGTTTCTAACAATGCAACATATTGGTCTAATCAAGTGGAGAACTCTGTGGAGTCTATGGCCCATAAAGAACGTGCTGAAAGGAGACAAAGCACTGGAAATGGCTATAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGTAGAAGAAAGTATGCTACCAAACACATTGCCTACAAGGGTGGGAGATGATAGGTGTGTTCCATATTTAGAGGCAGAGTCTGACCAGCATTCTGAACCATCGAATGTTAATCGTGCTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCCTGAAGCACAAAGCAAGCAAATAAGGAGCTGTACGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAGGATCTGCTTAAGAAATTAGAGCAGATGTTTGACATCAAGGGTGAGCTTTGTGGATCCAGTAAAACATGGCAGCTTGTCTACACCGATAATGAAGATGATGTGATGATGGTTGGAGATATTCCATGGAATGAGTTCTGTGGTGCTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAAAAGCTCTCGCCCAAAATATTGCTTTCCATCGGTGAAGAAGCTAAAACAAGCAAGCTGGATTCGGAAGCAGCAGTTAATACTGAGGAACAGGAGCAGTCATCTATTGTGGGGCCTGATTGTTAA 2025 0.4533 MAYVAANQTSGGNHPGPTNDELYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSEQHMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEQDQSEVSSPDEPLPEAPRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSIFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSVNKYLEARGHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNMSPVWANSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTTPANSQPTQRNKRARPPLLPSSMPDSSHGVWKSPVKSPPFPYRDPQHGRDLYSSSKFNSTPTNFLGIGGNSPLGAVSNNATYWSNQVENSVESMAHKERAERRQSTGNGYRLFGIQLLENSNVEESMLPNTLPTRVGDDRCVPYLEAESDQHSEPSNVNRADIPSVSCDAEKSCLQSPPEAQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLKKLEQMFDIKGELCGSSKTWQLVYTDNEDDVMMVGDIPWNEFCGAVRKIFIYTAEEVKKLSPKILLSIGEEAKTSKLDSEAAVNTEEQEQSSIVGPDC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0315 674 MobiDBLite consensus disorder prediction 359 373 - -
Dere10g0315 674 MobiDBLite consensus disorder prediction 651 674 - -
Dere10g0315 674 FunFam Auxin response factor 290 362 - -
Dere10g0315 674 ProSiteProfiles PB1 domain profile. 548 641 IPR000270 GO:0005515
Dere10g0315 674 Pfam AUX/IAA family 593 638 IPR033389 -
Dere10g0315 674 Pfam AUX/IAA family 545 584 IPR033389 -
Dere10g0315 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 637 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere10g0315 674 Gene3D - 124 229 IPR015300 -
Dere10g0315 674 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Dere10g0315 674 Gene3D - 543 637 - -
Dere10g0315 674 CDD B3_DNA 125 227 IPR003340 GO:0003677
Dere10g0315 674 Gene3D - 290 363 - -
Dere10g0315 674 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Dere10g0315 674 MobiDBLite consensus disorder prediction 359 408 - -
Dere10g0315 674 SMART B3_2 127 229 IPR003340 GO:0003677
Dere10g0315 674 SUPERFAMILY CAD & PB1 domains 550 625 - -
Dere10g0315 674 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Dere10g0315 674 FunFam Auxin response factor 543 637 - -
Dere10g0315 674 FunFam Auxin response factor 125 229 - -
Dere10g0315 674 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0315 Dere-ChrDere10 5738775 5747333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0315 4 671 B3 DNA Binding Superfamily AT1G59750 68.889 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere10g0315 B3 1e-19 CL0405