Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0308 ATGGAACTTTCTAGTCAAGAACCAGAAATCCCAATCCCAATAAACAGTACTACTTATGGTGGGGAACATGGTAATGGCCATGGGCAGGAGGGGCATGGGAACTTGGCCCATCATCATCATATCCACCAGGACCCTTCCAATGGCTCCTCCATTACACACCAACCAGTCCTTCAAGATCAGGACCACGGACCCTACAACAAGAAGAAAGTGGTAAGGTACAGAGAATGCCTTAAGAATCATGCAGCATCCATGGGAGGTAATGCCCTTGATGGGTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACAATAGAGGCCTTAACCTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGGAAAGAAGTCGAAGGTGAGCCCTCTTACTACAAATTTGGGAGGAAATTCATCTTGGGACATCACAAGAGTGTCTTAGCCCCTGAGGCTCTTGTGGGGTACCCTACAGGTAACATTCTCCCTTCAAGAACTGTGCCACCACCACCACACCAGATGATACTGCCCTACAATGTAGGGTCACTTCCTTCAGAATCTGATGAGCAAGAAGATGGTGGAGGAGGAGGAATGGTGGGTAGGCCAGCATCATCACAGATAGTGAAGAAAAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGACAAGATGCTGAATTTTGCAGAGAAAGTTGGGTGGAAGATTCAGAAGCAAGAAGAGTCTGTTGTTCAACAATTCTGCCAAGAGATTGGGATCAGAAGAAGAGTGCTCAAGGTTTGGATGCACAACAACAAGCACAATCTAGCCAAAAAGATTAATAATCCTCCACCACCACCAACAGCAACTGTTTAG 843 0.4709 MELSSQEPEIPIPINSTTYGGEHGNGHGQEGHGNLAHHHHIHQDPSNGSSITHQPVLQDQDHGPYNKKKVVRYRECLKNHAASMGGNALDGCGEFMPSGEEGTIEALTCSACHCHRNFHRKEVEGEPSYYKFGRKFILGHHKSVLAPEALVGYPTGNILPSRTVPPPPHQMILPYNVGSLPSESDEQEDGGGGGMVGRPASSQIVKKRFRTKFTQEQKDKMLNFAEKVGWKIQKQEESVVQQFCQEIGIRRRVLKVWMHNNKHNLAKKINNPPPPPTATV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0308 280 Gene3D - 196 267 - -
Dere10g0308 280 MobiDBLite consensus disorder prediction 179 201 - -
Dere10g0308 280 MobiDBLite consensus disorder prediction 45 59 - -
Dere10g0308 280 NCBIfam homeobox domain, ZF-HD class 206 262 IPR006455 -
Dere10g0308 280 MobiDBLite consensus disorder prediction 1 64 - -
Dere10g0308 280 SUPERFAMILY Homeodomain-like 194 267 IPR009057 -
Dere10g0308 280 FunFam Zinc-finger homeodomain protein 2 196 267 - -
Dere10g0308 280 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 122 IPR006456 -
Dere10g0308 280 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 265 - -
Dere10g0308 280 MobiDBLite consensus disorder prediction 1 23 - -
Dere10g0308 280 Pfam ZF-HD protein dimerisation region 71 123 IPR006456 -
Dere10g0308 280 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 72 123 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0308 Dere-ChrDere10 5639732 5640574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0308 1 271 ZF-HD Transcription Factor Family AT2G02540 47.468 7.26e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere10g0308 ZF-HD_dimer 1.3e-29 No_clan