Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0307 ATGGACGAAACCCTAACCCTACCACCAAAGTCTTCCGAAGCGCCAGCTTCTGATGCTGCTGCTGCTGAAGAGGAGGACAATATGAACGGTGGAGACGAAGACATGCGTGATGCAGCTGAAAAACCTGATACTTCCGGTTCTGATTCTGAAGATTCTCAGTCCGATTCCGATGACGAAGCTCAGCAGAACCTTCAACTCCAATCCCTCGAAACTGAGCTCGTTGCTAACCCCTCCAACTACGATGCTCATGTGCAATATATAAAACTACTGAGGAGAATGGGGGACATTGAAAAGCTGAGAAGAGCACGGGAAGCTATGAATGAACTGTTTCCATTGAGCCCTGCAATGTGGCAGGAATGGACCAAAGATGAGGCTTCTCTCAATACTGGGTCTGAGGCTTTTGATAAAATTCTGAAGCTTTATGAACGTGGAGTGTCTGATTATCTGTCTGTCCCTTTGTGGTGTGATTACATTAATTTTGTCCAAGAGTTTGATCCATTGGTACGTCAATGTTCGCCTGATGGCATTTCCAAGGCAAGGGACCTCTTCGAGCGTGCTCTTACTGCAGCTGGTTTGCATGTTGCAGAGGGCAATAAAATATGGGAAGCATATCGGGAATTTGAGCAGGCTATACTTCTTACCCTTGATGAGGCTGACATAGAGGCAAAAGATAAACAGGTACAACGAATTAGAAGTTTATTCCACCGTCAGTTGTCTGTTCCCCTTGCTGGTATGAGTTCAACACTTATGGTCTATAAGGCTTGGGAGGTTGAACAAGGTAATCTTCGTGATGTTGAGTCTAGTGACCTTGCTGAAATTTATCCCCATGTTGCCTCTGCATACCAGAAGGCATTAGATATGTACAATGCCCGTGTTCATCTTGAAGAACATATTTCTAGCCAGGACACTTCTGACTCAGAAAGACTACAACACTACATGAACTATGTGAAATTTGAACAATCTTCTGGAACACCAGCCAGAGTTTTAGTTCTATATGAGAGAGCTATTACAGACTTACCTATATCATTTGATCTATGGCTTGATTATACTCATTACTTGGACAAAACTTTAAAGGTTGGTAATATTGTAACCAGCGTTTATTCCAGAGCCACTAAGAACTGTCCTTGGGTTGGAGAACTTTGGGTTCGGTATCTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGACATAGCTGCAGTCTTTGAGAAATCCCTGCAATGTACCTTTTCAACCGTTGATGAGTATCTTGATTTATTTCTCACTCGAGTAGATGGCTTAAGGCGGATAATGGCATCCACTGGTGAAGGGGTTCTGTTGGAGTACAAAAAAATAAGGGAGACCTTTCAGCATGCCTCAGATTATTTGTCACCACAGCTGAAGAATACAGAGGGTTTGCTGCGTTTACATGCTTATTGGGCCCATTTAGAAATTAAATATGGAAAAGATATAACTGCAGCTCGTGGAGTCTGGGAGAGTTTTCTTAAGATCTGTGGCTCAATGCTGGAGGCATGGAAAGGTTATATAGCAACGGAAATTGAACATGGTCACATAAGTGAAGCTAGGTCCATATACAAGAGATGCTATAGTAAGAGATTTTCTGGGACTGGCTCAGAGGACATATGCCATTCATGGTTACGCTTTGAGAGGGAGTTTGGTACCTTGGAGGATTATGATCATGCCTTACTAAAGGTTAGCCCTCGTACGGAAGAACTACAATTATATAGGATACAGCAAGAAAACAAGTCAACAGAGGAGAAAGAAAATCATCCTAAAAGAAATGCTCGTGACAAGAGAAAGCTGGAACCTGATACAACTGATGAACAGTCTCCAGCAAAGCGACGGAGAGAAGCTGGGAAAATCCCAAAGAGAGTTCCTGAGGAAAATAAAGTTCAAGTCCAGAACTTTCGACAGGTGACGAAGGTGGAAGAGGCCAATGTGGAGATCAACAAAGTTGACGACGTAACTAAACAACAGTCTACCTATGAAAAAAGCAAGGCCTTCTCTGACCAGTGCACTGTCTTTATATCAAACCTAAACCCTACGGCAAATTATGAACACATTCGTAATTTCTTCAGTGATGTTGGTGGAGTTGTTGCCATTCGTATTCTACATGACAAGTTTACTGGAAAATCAAGGGGACTGGGTTATGTGGATTTTTCGGATGAAGAGCATCTCGCTGCAGCTGTAGCTAAGAACAAGCAGAAGTTACTTGGGAAGAAGCTAAGTATTGCTCGGTCTGATCCAAAACGAGGCAGAGAGGAATCTTCTGGTCAGAGAAACTTGAAAGAACAAACACCTGCCGCTGATCGATCTGGTCAAGCAGGTTCTGTAAAGGAAACCAAGTCTGCTACTAGGAAGCCTGGAAGTGACAACATCCAGATCAAGGGGAAGAACACTTTTGCAGTGCCCAGAAACGTCAAACCACTTGGTTGGACTTCGAATAAGCCCAAGACTGAAGAGGATGAGAAGCCAAAATCCAATGATGAATTCAGAAAAATGTTCATTAAAAAAGAATAG 2520 0.4306 MDETLTLPPKSSEAPASDAAAAEEEDNMNGGDEDMRDAAEKPDTSGSDSEDSQSDSDDEAQQNLQLQSLETELVANPSNYDAHVQYIKLLRRMGDIEKLRRAREAMNELFPLSPAMWQEWTKDEASLNTGSEAFDKILKLYERGVSDYLSVPLWCDYINFVQEFDPLVRQCSPDGISKARDLFERALTAAGLHVAEGNKIWEAYREFEQAILLTLDEADIEAKDKQVQRIRSLFHRQLSVPLAGMSSTLMVYKAWEVEQGNLRDVESSDLAEIYPHVASAYQKALDMYNARVHLEEHISSQDTSDSERLQHYMNYVKFEQSSGTPARVLVLYERAITDLPISFDLWLDYTHYLDKTLKVGNIVTSVYSRATKNCPWVGELWVRYLLSLERGHASEKDIAAVFEKSLQCTFSTVDEYLDLFLTRVDGLRRIMASTGEGVLLEYKKIRETFQHASDYLSPQLKNTEGLLRLHAYWAHLEIKYGKDITAARGVWESFLKICGSMLEAWKGYIATEIEHGHISEARSIYKRCYSKRFSGTGSEDICHSWLRFEREFGTLEDYDHALLKVSPRTEELQLYRIQQENKSTEEKENHPKRNARDKRKLEPDTTDEQSPAKRRREAGKIPKRVPEENKVQVQNFRQVTKVEEANVEINKVDDVTKQQSTYEKSKAFSDQCTVFISNLNPTANYEHIRNFFSDVGGVVAIRILHDKFTGKSRGLGYVDFSDEEHLAAAVAKNKQKLLGKKLSIARSDPKRGREESSGQRNLKEQTPAADRSGQAGSVKETKSATRKPGSDNIQIKGKNTFAVPRNVKPLGWTSNKPKTEEDEKPKSNDEFRKMFIKKE 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0307 839 SMART hat_new_1 323 355 IPR003107 GO:0006396
Dere10g0307 839 SMART hat_new_1 482 514 IPR003107 GO:0006396
Dere10g0307 839 SMART hat_new_1 94 126 IPR003107 GO:0006396
Dere10g0307 839 SMART hat_new_1 516 551 IPR003107 GO:0006396
Dere10g0307 839 SMART hat_new_1 358 390 IPR003107 GO:0006396
Dere10g0307 839 SMART hat_new_1 174 210 IPR003107 GO:0006396
Dere10g0307 839 SMART hat_new_1 132 163 IPR003107 GO:0006396
Dere10g0307 839 MobiDBLite consensus disorder prediction 579 629 - -
Dere10g0307 839 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 672 749 IPR000504 GO:0003723
Dere10g0307 839 MobiDBLite consensus disorder prediction 741 760 - -
Dere10g0307 839 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 674 742 IPR000504 GO:0003723
Dere10g0307 839 SMART rrm1_1 673 745 IPR000504 GO:0003723
Dere10g0307 839 Pfam Lsm interaction motif 822 837 IPR008669 -
Dere10g0307 839 SUPERFAMILY RNA-binding domain, RBD 665 759 IPR035979 GO:0003676
Dere10g0307 839 MobiDBLite consensus disorder prediction 1 61 - -
Dere10g0307 839 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 47 782 - -
Dere10g0307 839 MobiDBLite consensus disorder prediction 815 839 - -
Dere10g0307 839 MobiDBLite consensus disorder prediction 761 799 - -
Dere10g0307 839 MobiDBLite consensus disorder prediction 580 627 - -
Dere10g0307 839 Gene3D - 638 783 IPR012677 -
Dere10g0307 839 Gene3D Tetratricopeptide repeat domain 302 591 IPR011990 GO:0005515
Dere10g0307 839 Gene3D Tetratricopeptide repeat domain 69 266 IPR011990 GO:0005515
Dere10g0307 839 MobiDBLite consensus disorder prediction 32 48 - -
Dere10g0307 839 SUPERFAMILY TPR-like 70 560 IPR011990 GO:0005515
Dere10g0307 839 MobiDBLite consensus disorder prediction 741 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0307 Dere-ChrDere10 5613124 5622184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0307 662 754 Eukaryotic Initiation Factors Gene Family AT2G36660 29.787 6.75e-06 47.8