Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0304 ATGTCTGAAATGCGGGTTTCTGATCCAAGCAAGCTCCACTTGAAGAAGAAGGAGCTCACTCAAATTCGTAAAGCTGCTCGTGTCCTGAGGGATCCTGGTACGACGTCGTCCTGGAAGTCACCTCTTAGCTCTTCAAGATCTATAGCTGCTGCTTCTGCTTCTGCATGGAAGAGCAACATCAACAATGGAAAAGAGAATAGCGTTTTCTTGTGCAATTGGAAGAATCACAAATCATCAAGCGAGGCTAAAAACGACGACGTAGAAGAAGAAGAAGAAGAAGATACTGATTTTGCTGCTGGTGGTGGCAACGATGAATCTTCTTCATCTCTTCTGGGAAGTTTCGAGGATAGCTTGAGCGATGCTCGAGGTTGTTATTCTAAGAGCGATTCTTATTTGCGAGGTGGGACTCGTTCTTCTATTTTCCGGTGCAGGGACGCAAATCTTGTTGCTTCGGCCAGAAGAACAGTAGGCAGTATTAAGAAAAAGAGTAAGAAAACCAACACATATTTGGATAATTTAACAAAATATCAGCAACGAGAAACCAATCTGGGTAGAAAATTAATAAATTCCAAGGCGTTCTTAGAGGACTCAATTGATCAGTCTGATGACACTGAAGATTACTGTAATTCTGAGGATTTAAGGCGAATTTCAGGGTCAGGGGCATCTTCTTTGCTGTTGAAACTTAAGCATAAGAATTGGTCTCGTTCTTCCTCTAAGTTACTGAGAAGTAGCCGAAAAGAGGACTCTTCTTATTCTTATAGTACACCTGCTTTATCAACCTGTTCTTATAATAATTATGGTCACTATAATCCAAGTACTGTTGAATCCTGGGACGCCACGACAACCTCAGTGAATGATGGTGATGATGATGTAGATGATCATTTGGATTTGCCTGGCCAGCGGGGATGTGGCATTCCTTGCTACTGGTCAAAGAGGACTCCAAAACATAGAGGGATATGTGGGAGTTGTTATTCTCCTTCACTTTCTGACACTTTGAAGAGGAAAGGGAGTAACTTATTCTGTGGAAGTCATACTATCTATCCGAGACACCGAAGATCCTTGTCAAGCTCTAACAAGTGGAAACTTTCTTCGAGGAGTGCTCAAGGTGTTCTTCCATTACTCACCAGCAGTGGTGATGTTAGAGGAGGGTCATCAGTAGGAACTGGAAGGAGCGATGATGAACTTTCCACAAACTTTGGGGAACTTTATCTTGAGGGTTTAAGTCGGTTAGATGGAAAAAGATGGTCATCAAGTTGTAGGAGTCAAGATGGATTGGAGATTGTGGCTATAGAAGGGGAAGGGGATGAGGAAGGCACGCTAGAAAATGCAAGGAGTTTCAGTCAGAAGTATAAGCCTACTTCCTTTGGTGAATTGATTGGCCAGAATATTGTGGTTCAGTCACTTATGAATGCTGTTTTGAGGGATAGAATTGCTCCCGTTTATCTTTTCCAAGGTCCCCGTGGTACTGGGAAAACATCAACAGCCAGAATTTTTGCTGCTGCCTTGAATTGTATGGCTTCTGACGCGAGTAAGCCTTGTGGATACTGCAGGAATTGCATTGATCTCATTTCTTGCAAGAGCCGGGATCTTTTGGAAGTTGATGGAACTAATAAAAAAGGGATTGATAGAGTTAGATATCTTTTGAAAAGACTAACCGTAGGACCATCATCAGCCTCCTCACGATGCACCGTTCTTGTGATTGATGAGTGTCACTTGCTTCCTTCTAAGGCATGGTTGGCATTTCTCAAGTTTCTGGAAGAACCACCTCAGCAAGTTGTGTTCATATTTATAACAACTGATCTTGACAATGTGCCTCGGGCAATACAATCTCGATGCCAGAAGTACCTCTTTAACAAAATTAAAGATGGAGATATTGTGGCCAGATTGAGGAAAATATCTGCTGAGGAGAACCTAGATGTTGAAACAGATGCGCTGGACCTTATTGCTATGAATGCGGATGGTTCACTTCGAGATGCAGAAACTATGTTAGAACAGCTCAGTTTGCTGGGGAAAAAAATTACTACTTCGCTTGTAAATGAACTTGTGGGTGTTGTTTCAGATGAAAAATTACTGGAGCTTTTGGAGTTAGCAATGTCATCAGACACAGCCGCAACAGTAAAAAGAGCCAGAGAAGTGATGGACTCTGTTGTTGATCCAGTGATTTTGATGTCTCAAATGGCTTGCCTCATTATGGACATCATTGCTGGATCATATACTGTCATTGATGCCAAATCTGGTGATTCATATTTTAGTGGACGAAGTTTGAATGAGTCAGAGTTGGAGAGGTTAAAGCATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCTAGTGAACGCTCGACATGGTTCACGGCAACTCTGTTACAGCTTGGTTTGATGCCTTCACCAGATCTTACCCAGTCTGGCAGCAGCAGGAGGCAGAGTTGCAAGACTTCTGAAGATGATCCATCAAGTGCTTCAAGAGAAGTTACTGCTCACGAGCATAATTCAGATGTTCAATATATGCCTCGAAAGTCAACATCCCCTGCATCCCAGCAAAAACCTGGAAATGCCAATTCCAGACTTCAGAGCAATAATTCATCAAAGTTGGATGGTATCAGCTTGAGTTCATGGCCATCAAATGGCCTAGTCATAGATGATGATGCCACGCCTGCCTCATCTGATGATCTTATTGTTGGGAATATGATGTTAAGATACGTAAATTCAGGAAAGTTATGTGATATCTGGGAATGTTGTATAGAGAGGTGTCACTCTAAGACACTGAGGCAGCTGCTACACAATCATGGAAAGCTCGTATCCATATGTGAAGTTGAAGGTGTTCTGGTTGCATATGTTGCTTTCAGGTATAGAGATATTAAACATAGGGCTGAAAGGTTTTTGAGTAGTATTACAAATTCCATGGAAGTGGTACTTAGGCGCAATGTGGAGGTCAGAATTATTCACTTGCCAGATAGTGTGGGTCAAAGTCTGCCTGGTCTAATGCAGGCAGAGTCAACATTGGTAAGTAAGAAGGAAAAAAGAGGGAACCTTGCAAATGAAATAGATGCTAATTCTAGTTTCCCTCCTTTGCTGGATGGAAACTTGCAAACTATCAATGATTCATCAGATTTTATGGCTGAGGATAATGGTGTGAGAGAGAACGAACAGGAAATTCCAACACAGAGAGTCGAATCTATTATACGTGAGCAGAGGCTGGAAACTGCTTGGCTACAGGCTGTAGAAAAAGGTTCCCCAGGATCATTGAATCGTGTAAGACCTGAGAAGAATCAGGTCCTGCCTCAGGAAAATATCTTCTGTAAAGAGCCAAAAGAGTCCATTGATTCAACAAGGTTTCCCTCTCAGCATTGGGGAGATGACCTTAATCATGAAGTCAAACTTTTGAATGTTAAAAATGGAAGGGTCCTACAGAAGGGTCAGATTAGTAGAAGGGTAGACCGTTGTCCCATGTCCCCTAGTTTATTGCACGGTGGCAGTTTAGCAACATGCTCCAACAACGACAATCTGGGATATGAATCAGGCCCGGGAGCTGCAGGTTGCAGTGGACTTCTATGTTGGAATAACTCCAATCGAAGGATAAAGGTAAAAGGTACCCCCGTCAGAGCACATAAAGTTGGACATTTTTCATTATTTGGTGAGTGTGGTAAATTAAGGAAAAAGGAATTCAAAAGATAA 3684 0.4226 MSEMRVSDPSKLHLKKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSIAAASASAWKSNINNGKENSVFLCNWKNHKSSSEAKNDDVEEEEEEDTDFAAGGGNDESSSSLLGSFEDSLSDARGCYSKSDSYLRGGTRSSIFRCRDANLVASARRTVGSIKKKSKKTNTYLDNLTKYQQRETNLGRKLINSKAFLEDSIDQSDDTEDYCNSEDLRRISGSGASSLLLKLKHKNWSRSSSKLLRSSRKEDSSYSYSTPALSTCSYNNYGHYNPSTVESWDATTTSVNDGDDDVDDHLDLPGQRGCGIPCYWSKRTPKHRGICGSCYSPSLSDTLKRKGSNLFCGSHTIYPRHRRSLSSSNKWKLSSRSAQGVLPLLTSSGDVRGGSSVGTGRSDDELSTNFGELYLEGLSRLDGKRWSSSCRSQDGLEIVAIEGEGDEEGTLENARSFSQKYKPTSFGELIGQNIVVQSLMNAVLRDRIAPVYLFQGPRGTGKTSTARIFAAALNCMASDASKPCGYCRNCIDLISCKSRDLLEVDGTNKKGIDRVRYLLKRLTVGPSSASSRCTVLVIDECHLLPSKAWLAFLKFLEEPPQQVVFIFITTDLDNVPRAIQSRCQKYLFNKIKDGDIVARLRKISAEENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKKITTSLVNELVGVVSDEKLLELLELAMSSDTAATVKRAREVMDSVVDPVILMSQMACLIMDIIAGSYTVIDAKSGDSYFSGRSLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGLMPSPDLTQSGSSRRQSCKTSEDDPSSASREVTAHEHNSDVQYMPRKSTSPASQQKPGNANSRLQSNNSSKLDGISLSSWPSNGLVIDDDATPASSDDLIVGNMMLRYVNSGKLCDIWECCIERCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFRYRDIKHRAERFLSSITNSMEVVLRRNVEVRIIHLPDSVGQSLPGLMQAESTLVSKKEKRGNLANEIDANSSFPPLLDGNLQTINDSSDFMAEDNGVRENEQEIPTQRVESIIREQRLETAWLQAVEKGSPGSLNRVRPEKNQVLPQENIFCKEPKESIDSTRFPSQHWGDDLNHEVKLLNVKNGRVLQKGQISRRVDRCPMSPSLLHGGSLATCSNNDNLGYESGPGAAGCSGLLCWNNSNRRIKVKGTPVRAHKVGHFSLFGECGKLRKKEFKR 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0304 1227 Gene3D - 622 683 - -
Dere10g0304 1227 Coils Coil 756 783 - -
Dere10g0304 1227 FunFam DNA polymerase III subunit gamma/tau 621 683 - -
Dere10g0304 1227 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 448 859 - -
Dere10g0304 1227 MobiDBLite consensus disorder prediction 79 114 - -
Dere10g0304 1227 MobiDBLite consensus disorder prediction 85 99 - -
Dere10g0304 1227 SMART AAA_5 477 639 IPR003593 GO:0016887
Dere10g0304 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 667 IPR027417 -
Dere10g0304 1227 MobiDBLite consensus disorder prediction 812 837 - -
Dere10g0304 1227 CDD AAA 459 617 - -
Dere10g0304 1227 FunFam DNA polymerase III subunit gamma/tau 441 619 - -
Dere10g0304 1227 SUPERFAMILY post-AAA+ oligomerization domain-like 691 795 IPR008921 GO:0003677|GO:0006260
Dere10g0304 1227 Gene3D - 437 618 IPR027417 -
Dere10g0304 1227 MobiDBLite consensus disorder prediction 25 45 - -
Dere10g0304 1227 MobiDBLite consensus disorder prediction 798 863 - -
Dere10g0304 1227 Pfam DNA polymerase III, delta subunit 460 620 - -
Dere10g0304 1227 NCBIfam DNA polymerase III subunit gamma/tau 445 794 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dere10g0304 1227 CDD HLD_clamp_pol_III_gamma_tau 620 683 IPR045085 -
Dere10g0304 1227 MobiDBLite consensus disorder prediction 838 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0304 Dere-ChrDere10 5529422 5535785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0304 439 735 Core DNA Replication Machinery Family AT1G21690 25.490 5.31e-16 79.0