Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0303 ATGGAAAGCATACCGCACCCTATACCGAGAACAGTGGAGGAGGTTTTCAGCGACTTTAAGGGAAGAAGAGCTGGATTGATTAAGGCCCTCACTACTGATGTTGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAAGAGAACTTGTGTCTTTATGGATTACCAAATGAAACGTGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTCGCAAGGGATGGAATGCAAGAGAAGGACTGGTTGTCATTGGTTGCAGTTCATAGTGACTCATGGCTGCTTGCCGTGTCCTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGACTTTTTCAGATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACAGGAAGTGCTAAGCAATCAAAGGATCAATCAGCTACTCACAACAATGGTAGCAAAAGCAAATCAAGTGGGAAGGTGTCCTCCCAATCTGACTCTCAGGCCAAGGGAGTGAAGATGTCTCCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGATGAAGAAGATGATGAACAAGGGGCGACTTGTGGGGCATGTGGTGATAATTACGGCACTGATGAGTTCTGGATCTGTTGCGATGTGTGCGAGAGATGGTTCCATGGCAAATGTGTGAAAATCACTCCTGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCTAGCTGCAGTAACAAGAGGGCTAGAGTTTAG 762 0.4554 MESIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDQSATHNNGSKSKSSGKVSSQSDSQAKGVKMSPPPKEEDESGEEDEEDDEQGATCGACGDNYGTDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0303 253 CDD PHD_AL_plant 200 249 IPR044104 -
Dere10g0303 253 SMART PHD_3 199 247 IPR001965 -
Dere10g0303 253 FunFam PHD finger alfin-like protein 192 248 - -
Dere10g0303 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Dere10g0303 253 Pfam PHD-finger 200 249 IPR019787 -
Dere10g0303 253 MobiDBLite consensus disorder prediction 183 198 - -
Dere10g0303 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0006355|GO:0042393
Dere10g0303 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Dere10g0303 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Dere10g0303 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Dere10g0303 253 MobiDBLite consensus disorder prediction 141 198 - -
Dere10g0303 253 MobiDBLite consensus disorder prediction 141 173 - -
Dere10g0303 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0303 Dere-ChrDere10 5514350 5519603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0303 1 250 Alfin-like Transcription Factor Family AT1G14510 83.600 7.74e-136 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dere10g0303 Alfin 1.9e-69 No_clan