Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0301 ATGGCAATTGCAGCTTCTGCAAGCTCATCATCTTCACCCACCATGAGTCTCACCCATAGCCATAGCCACGACGACGCCACTACCACCGCGAAGCTCGACGACGATCACGAGCTCGACATGGTGATGCCCGGCTTCCGATTCCACCCCACTGAAGAAGAACTTGTAGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTCGAGCTCATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCATGGCAGCTATCGGAGAGAAGGAATGGTACTTTTATGTGCCGAGAGATCGGAAGTATCGGAACGGGGACCGACCGAACCGCGTGACGACGTCGGGCTATTGGAAGGCGACGGGAGCTGATAGAATGATCAGAAGTGAGAACTGTAGGTCCATTGGCCTCAAGAAAACCCTAGTTTTCTACTCCGGCAAAGCTCCCAAAGGCATCAGAACCAGTTGGATTATGAACGAGTATCGCTTGCCCCACCATGACACTGAACGATACCAAAAGGCTGAGATATCGCTTTGCCGAGTGTACAAAAGACCAGGAGTAGAAGACCATCCTTCACTTCCTCGTTGTCTCCCAACCAGGCCATCTTCATCCTCAAGAGCTTCTTCACACTCATCAGACAAGAACATCAACAAGCACAGCAACGAAACGTTTCATCATCATCATCAGAGCAACATAGAATTTGTGGGACAAAGTACGATGAATAATAATTACACTCCACAAACGGAGGAGGAAGTCGTAGGAAAAACCTCGTCTGTTGTCACTACAGTTCTTGGGCTTTCCAGGCAAAACACTCCCTACCCTAACTCTTCAACTTCACCAATGGCTCCTCCATTAGTTCCATTAATGGAGGACGAAGGGTTATTGATGCTCACTAATATGCAGCCATTAATCATGAAGCAAGCAGCTCAAGCCTCGTCTAGCTCCTCCTCCTCCTTCTTCTTCCCTCTGGGTAATTCTTCGTCTTCTTCATCTAACTTGGACGATCTCAATAGGCTAGTGAGTTACAATCAGATGCAACAATACCACAGTAGTAACAGTGCTCCAAGTCATCATCAGTTCTCTAATTTTCTAGTGCAACCTCAACCAACGGCTCTGATCAATTCTTCATCCCTACCAAATTCGCTTCCATTAACAACAACAACCACCTCAACGACCTTCTCTGGACTGTGGGAGTGGAATCTCATACCTGAGGCAAATAACAGAGAGTACAGCAACATGTCCTTCAAGTAA 1263 0.4759 MAIAASASSSSSPTMSLTHSHSHDDATTTAKLDDDHELDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENCRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHDTERYQKAEISLCRVYKRPGVEDHPSLPRCLPTRPSSSSRASSHSSDKNINKHSNETFHHHHQSNIEFVGQSTMNNNYTPQTEEEVVGKTSSVVTTVLGLSRQNTPYPNSSTSPMAPPLVPLMEDEGLLMLTNMQPLIMKQAAQASSSSSSSFFFPLGNSSSSSSNLDDLNRLVSYNQMQQYHSSNSAPSHHQFSNFLVQPQPTALINSSSLPNSLPLTTTTTSTTFSGLWEWNLIPEANNREYSNMSFK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0301 420 SUPERFAMILY NAC domain 41 188 IPR036093 GO:0003677|GO:0006355
Dere10g0301 420 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 40 304 - -
Dere10g0301 420 Gene3D NAC domain 50 191 IPR036093 GO:0003677|GO:0006355
Dere10g0301 420 ProSiteProfiles NAC domain profile. 41 188 IPR003441 GO:0003677|GO:0006355
Dere10g0301 420 Pfam No apical meristem (NAM) protein 43 167 IPR003441 GO:0003677|GO:0006355
Dere10g0301 420 MobiDBLite consensus disorder prediction 193 223 - -
Dere10g0301 420 MobiDBLite consensus disorder prediction 201 215 - -
Dere10g0301 420 MobiDBLite consensus disorder prediction 1 23 - -
Dere10g0301 420 MobiDBLite consensus disorder prediction 1 28 - -
Dere10g0301 420 FunFam NAC domain-containing protein 35 50 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0301 Dere-ChrDere10 5479247 5481972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0301 40 204 NAC Transcription Factor Family AT2G02450 93.939 3.13e-117 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere10g0301 NAM 9.2e-35 No_clan