Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0300 ATGCCCTCCCCCACGCTCCACAAAGTGTCTTCTCTATTATTGGTGTATGAGCTGGTGAGTGGGTTGGTTGGAAAGTGGATAACAAAGGGTTTTGTTATTCAGTATCAGGAAAATCATCAGAGTGTAGCAGACGCTGGTTATGAGGATTTCACCGCCCTAAAGTCCCTTATGGATAGCTGGGAGAACCCTCCTCCCACCTGGTTGGGATCAGATCCTTGTAATGGTTGGGAAGGAATTAAGTGCAAAAATTCGCGCGTTACTTCCATAACTTTATCAAGCACAGATTTGAAAGGCCAACTTTCTGGAGATGTTGGATCATTGTCTGAATTAGAGACCTTGGATCTGTCGAACAACAAGGGCTTAACAGGATCACTTCCCCAGACCATTGGAAATTTGAAGAACCTCTCAACCTTAATTCTTGTTGGCTGTGGTTTCAGTGGTCCAATTCCGGATGAAATAGGGAATCTACAGGAACTCCTCTTCCTAGCTATAAATTCCAATAAATTTATTGGACGAATTCCAGCTTCTATTGGTAATCTATCTAAACTGTATTTCCTAGACTTAGCTGATAATCAGCTTGATGGGCCCATCCCAGTATCTAGTGGCAGTAAGCCTGGTCTGGATAAGCTACACCATGCAAAGCATTTTCATTTTGGGAACAATAAGCTCTCAGGCCCTATTCCTTCTCAACTTTTTAGCCCAGAAATGACTCTAATTCATGTGCTTTTTGAAAGAAATGAACTTACTGGAAGCATCCCATCTTCACTTGGACATGTTACGAGTCTGGAGGTGGTGCGCCTTGATGGCAATTTATTAAGTGGACCTGTGCCTCAGAACATCAGCAACCTTGTGAAAGTTCAAGACTTAGGTTTCGTTTTTATGTTTGTCAGGTACTTGTCTAACAATAAGCTTTCAGGATCCCTGCCAAGCCTTGCTGGAATGAATGTCCTCAGCTACCTGGATATCAGCAACAACAGCTTTAGTTCATGGGATTTTCCACCATGGGTTACAACTCTACAGTCTCTAACAACTTTTTGTGCATTAGCTTTTGTTTTGCATTACAGAAAGATGGAGAACACACAACTTCAGGGACAGATCTCTTCTACATTGTTTAGCCTCCAAAATTTACAGACTGTGGCTCTAAAAGTCAATGAACTAAATGGAACTTTGAACATCGGCACCCCCTACAGCAGCCAACTGCGACTAATTGACTTGGAGAGTAATAGAATTGACAACTTCAAGCAAAATGTAGTCTCCAAAGTCAAGATAATACTTAAAGGCAATCCAGTTTGTGAAGAAACAGGAGTGACAGCAGAAAACTATTGCTCCACTTCCCAACCTAATGCTAACAATAACTTATATACAACATCGAATAACTGTCAGTCTGGTACCTGCAGTCCAGAACAGATTCTCAGCCCCAAGTGCAAATGCTCCTATCCATATACAGGAACTTTAATCTTTAGAGCACCTTCCTTCTCAGACTTGGGAAACGACACTTACTACCTAACTCTTGAGGAATCTCTTATGAATTCTTTTGAATCTCATCATCTACCTGTGGATTCAGTATCTCTGACCGAACCAACCATGGATTCAAATCAATATCTTAGATTGAGCTTACAAGTTTTCCCATCAATCGAAGTCCGTTTCAATAGAACTGGGACTTCGAGCATTGGCTTTCTGCTAAGTAGCCAGACTTTCAAGCCTCCTAAAAATTTGAGGCCATTTTACTTCGAAGCAAATAGATATGGACACTTTGAACCTACAGATTCCCGTAAATCATTAAACATTGGTGTCATAATTGGAGCAGCAGTTGGCGGTTCAGTCCTGCTAGTGTTATTACTCCTTGCTGGTGTTTACGCTTTATTCCAAAAGAAAAGAGCAGAAAGAGCAATTGACCGCAACAATCCATTCAGACGATGGGATAGTGAGAGCAACAGTGCTGTCCCTCACTTGAAAGGACCAAGGCAGTTCTCTTTTGATGAGACTAAAGAATACACCACAAATTTTTCTCAAGCTAATGCTATTGGATCTGGGGGCTATGGGAAGGTCTATAAAGGAACACTTCCAAATGGGCAACTGGTAGCCATAAAACGAGCTCAAAAAGAATCTATGCAGGGAGCACTCGAATTTAAATCTGAGATTGAACTCCTATCAAGAGTCCACCATAAGAATCTTGTGAGTCTTATAGGATTCTGCTTTGATAGAGGAGAACAAATGCTAATATATGAGTATGTGCCAAATGGAACTCTAAAGGATACTATCTCAGGAAAATCAGGAATTAGATTGAATTGGATTCGAAGGCTAAAAGTTGCCCTCGGTGCTGCCAGGGGTTTGGCTTATCTTCATGAACTTGCCAACCCTCCTATCATACATAGGGACATCAAATCAAACAATATTTTGTTGGATGAGCGCTTGAATGCAAAGGTTGCTGATTTTGGTCTCTCCAAGTCTATGGTTGATAGTGAAAAAGATCATATTACCACTCAAGTTAAAGGAACTATGGGCTATTTGGATCCAGAGTATTACATGTCTCAACAGTTGACTGAGAAGAGTGACGTTTACAGTTTTGGAGTGCTATTGCTGGAGCTGATAACTGCAAGAAGGCCTCTAGAAAGTGGGAAATATATCGTAAAAGAGATGAAGAACGCGATCAATAAGACAAAAGACTTATATGGTCTTCAGGAATTGATCGACCCAATCATGGATATAGAGTCAACAGCACTGAGTGGTTTTGAGAAGTTTGTAAATCTTGCAATGAAGTGTGTTGAAGAGTCAGGTGCTGATAGGCCTGCAATGAGTGAAGTGGTAAAAGAGATTGAAATGTTGTTGCTGTTAGCTGGTTGTAACCCTAATGCAGAATCAGCATCCACTTCAGCTAGTTATGAGGATGTTAGTAAAGGCAGTTCTAAGCATCCTTACAGCAATGAGTCCTTAAATTCTGGTGTAGTGCTTCCAAATACAAAAATTGAGCCTATGTAA 2979 0.4095 MPSPTLHKVSSLLLVYELVSGLVGKWITKGFVIQYQENHQSVADAGYEDFTALKSLMDSWENPPPTWLGSDPCNGWEGIKCKNSRVTSITLSSTDLKGQLSGDVGSLSELETLDLSNNKGLTGSLPQTIGNLKNLSTLILVGCGFSGPIPDEIGNLQELLFLAINSNKFIGRIPASIGNLSKLYFLDLADNQLDGPIPVSSGSKPGLDKLHHAKHFHFGNNKLSGPIPSQLFSPEMTLIHVLFERNELTGSIPSSLGHVTSLEVVRLDGNLLSGPVPQNISNLVKVQDLGFVFMFVRYLSNNKLSGSLPSLAGMNVLSYLDISNNSFSSWDFPPWVTTLQSLTTFCALAFVLHYRKMENTQLQGQISSTLFSLQNLQTVALKVNELNGTLNIGTPYSSQLRLIDLESNRIDNFKQNVVSKVKIILKGNPVCEETGVTAENYCSTSQPNANNNLYTTSNNCQSGTCSPEQILSPKCKCSYPYTGTLIFRAPSFSDLGNDTYYLTLEESLMNSFESHHLPVDSVSLTEPTMDSNQYLRLSLQVFPSIEVRFNRTGTSSIGFLLSSQTFKPPKNLRPFYFEANRYGHFEPTDSRKSLNIGVIIGAAVGGSVLLVLLLLAGVYALFQKKRAERAIDRNNPFRRWDSESNSAVPHLKGPRQFSFDETKEYTTNFSQANAIGSGGYGKVYKGTLPNGQLVAIKRAQKESMQGALEFKSEIELLSRVHHKNLVSLIGFCFDRGEQMLIYEYVPNGTLKDTISGKSGIRLNWIRRLKVALGAARGLAYLHELANPPIIHRDIKSNNILLDERLNAKVADFGLSKSMVDSEKDHITTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLLLELITARRPLESGKYIVKEMKNAINKTKDLYGLQELIDPIMDIESTALSGFEKFVNLAMKCVEESGADRPAMSEVVKEIEMLLLLAGCNPNAESASTSASYEDVSKGSSKHPYSNESLNSGVVLPNTKIEPM 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0300 992 Gene3D Transferase(Phosphotransferase) domain 1 745 951 - -
Dere10g0300 992 Gene3D Ribonuclease Inhibitor 46 204 IPR032675 -
Dere10g0300 992 CDD STKc_IRAK 675 940 - -
Dere10g0300 992 SUPERFAMILY L domain-like 52 345 - -
Dere10g0300 992 FunFam Leucine-rich repeat family protein 48 202 - -
Dere10g0300 992 FunFam Leucine-rich repeat protein kinase family protein 203 310 - -
Dere10g0300 992 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 745 955 - -
Dere10g0300 992 ProSiteProfiles Protein kinase domain profile. 669 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0300 992 Gene3D Ribonuclease Inhibitor 205 428 IPR032675 -
Dere10g0300 992 SUPERFAMILY Outer arm dynein light chain 1 298 456 - -
Dere10g0300 992 PANTHER RECEPTOR-LIKE PROTEIN 55 54 941 - -
Dere10g0300 992 Pfam Protein kinase domain 670 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0300 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Dere10g0300 992 MobiDBLite consensus disorder prediction 959 984 - -
Dere10g0300 992 FunFam Leucine-rich repeat protein kinase family protein 634 744 - -
Dere10g0300 992 MobiDBLite consensus disorder prediction 959 992 - -
Dere10g0300 992 Gene3D Phosphorylase Kinase; domain 1 640 744 - -
Dere10g0300 992 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Dere10g0300 992 SMART serkin_6 669 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0300 992 SUPERFAMILY Protein kinase-like (PK-like) 654 958 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0300 Dere-ChrDere10 5447470 5454894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0300 49 991 Receptor kinase-like Gene Family AT5G49760 54.008 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Dere10g0300 Pkinase 1.6e-48 CL0016