Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0246 ATGGGCGAACAGAAGGAACGTAACGTGCCGGTTCTGCCATGGATGCGGGACCCTGTTGATGTTTCCCTATCTGAAGAATGTCCTCTGGAACGCGTTCCTTGCCTTGATCCTAAGTTGAAGTTGGCATTGCAGAATATGGGCATCTCTAAGCTCTTTCCTGTGCAAGTTGCAGTTTGGCAAGAGACAGTTGGGCCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCTCTGCCAATAGTGCAAATGTTGTCAAAACGCATAGTAAAATGCCTGCGAGCTTTAGTGGTGGTGCCCACTCGTGATCTGGCCTTACAGGTTAAAGAAGTTTTTGATGCTATTGCATCTCCGCTAGGTTTACATGTTGGCTTGGCTGTTGGTCAGTCTTCAATAGCTGATGAGATTTCTAAGCTTGTCAATGTACCAGGATATGAGGTGGGCATGTGTTATGATCCAGAAGATATATCTCTTCGGTTCCAACTTGGCTTTCAGAGTAAGGTGGATATATTAGTAGCTACCCCTGGAAGGTTGATGGATCACATCAATACTACTAAAGGGTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGACTTCTTCGGGAGGCCTACCAATCCTGGTTACCTACTGTGCTGGAACTGACTCGATCTAAAGACGAGAATATTTATCCACCGGCTGCTTCTTTTCTTCTTAATTCATTTAGTGCATTAAGAACTAGAAGGAGATGTGGTTTTGGGAGGGGATTCAAAGATAAACTCTACCCCAGGTTGGCAAAGATGGTTCTATCTGCTACAATAACCCAGGACCCAGGCAAGCTTGTTCAACTTGAGCTACATCACCCAGTATTCTTGAAAGCTGGACAAATGCGTTATAGACTTCCAGAAAATTTGGAATCATTCAAACTGATCTGTGAAACAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTAAAAACGTTGGGAGGAGAAAAATGCATAGTTTTTACAAACTCTGTGGATTCAACCCATCGTCTGTGCAAATTACTGAACTACTTCAGTGATCTTCAATTTAAGATAAAAGAGTATTCTAGTTTTCAACATCAACATGTAAGAAGTAAGACGTTGAAGGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTGTCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTCATTAGTTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGTAGGACAGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACACTGATGTCCAAAGATGAGGTTCGACGATTTATGAAGTTGTTGCAAAAGGCTGAGAACAGTTCTTGCTGCGATCACACTGTTCCATCCAGTTTGATTGAAGAACTTCACGCTACTTACCAATCAGCACTAAAAAAATTTAAAGAGATAGTTTCGGAAGCTCGAAAGAAAACCAAGCGCAGTACAGAGACTTCTCAAGCAAAGAAAGAGAATGAAAAAGACCATACAGGGGAATAG 1557 0.4232 MGEQKERNVPVLPWMRDPVDVSLSEECPLERVPCLDPKLKLALQNMGISKLFPVQVAVWQETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSKRIVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGLAVGQSSIADEISKLVNVPGYEVGMCYDPEDISLRFQLGFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSKDENIYPPAASFLLNSFSALRTRRRCGFGRGFKDKLYPRLAKMVLSATITQDPGKLVQLELHHPVFLKAGQMRYRLPENLESFKLICETKVKPLYLAALLKTLGGEKCIVFTNSVDSTHRLCKLLNYFSDLQFKIKEYSSFQHQHVRSKTLKEFRKGEFQVLVSSDAMTRGMDVEGVRNVISYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFMKLLQKAENSSCCDHTVPSSLIEELHATYQSALKKFKEIVSEARKKTKRSTETSQAKKENEKDHTGE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0246 518 PANTHER RNA HELICASE 35 500 - -
Dere10g0246 518 Pfam Helicase conserved C-terminal domain 323 434 IPR001650 -
Dere10g0246 518 CDD DEADc_DDX51 39 295 - -
Dere10g0246 518 Gene3D - 24 302 IPR027417 -
Dere10g0246 518 CDD SF2_C_DEAD 311 442 - -
Dere10g0246 518 Gene3D - 312 517 IPR027417 -
Dere10g0246 518 SMART ultradead3 47 314 IPR014001 -
Dere10g0246 518 SMART helicmild6 350 434 IPR001650 -
Dere10g0246 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 476 IPR001650 -
Dere10g0246 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 456 IPR027417 -
Dere10g0246 518 Pfam DEAD/DEAH box helicase 53 286 IPR011545 GO:0003676|GO:0005524
Dere10g0246 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 298 IPR014001 -
Dere10g0246 518 MobiDBLite consensus disorder prediction 494 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0246 Dere-ChrDere10 4725939 4734403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0246 57 449 Eukaryotic Initiation Factors Gene Family AT3G13920 23.691 5.99e-28 114