LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0227	ATGGGTCGTCGAAAGATTGAGATGAAACTGGTGAGGGACTCAAGCTCAAGGCAAGTCACCTTCTCCAAGCGTCGAACAGGTGTATTCAAGAAAGCGAATGAGCTAGTAACCTTATGTGGAGCAGAAGTTGCTATTGTTACTTTCTCCCCAGGAGGGAAACCTTTCTCCTTTGGTGAACCAAGTGTTGATGCTGTGGCCAATAGGTTTCTTAATCGCAGTTCCACCAGAAACAAATCCATATTAACAAAGGGTGCCAATAATCATATGATTGGGAAGCTAAGCCAACAACTTACAAATTTGATGAACGAGGTCCAAGAGGAGAAGAAGAAGGGCAAGATGCTTGACAAGACCTTGAAGAATAATAACTTGACCCAAGGGAAATTACCAGTGGAAGGGTTGAATTTGAATGAGCTTCAAAAGTTGAAAGATTCGCTGATAGAGTTGCAAGATGATGTGGAGGCATCATCAACCTTGATGCTCCTTGCTGAGAAAGCTGTGGATAAGAAAGCAAAATCGTAA	519	0.4258	MGRRKIEMKLVRDSSSRQVTFSKRRTGVFKKANELVTLCGAEVAIVTFSPGGKPFSFGEPSVDAVANRFLNRSSTRNKSILTKGANNHMIGKLSQQLTNLMNEVQEEKKKGKMLDKTLKNNNLTQGKLPVEGLNLNELQKLKDSLIELQDDVEASSTLMLLAEKAVDKKAKS	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0227	172	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Dere10g0227	172	PANTHER	MADS BOX PROTEIN	3	153	-	-
	Dere10g0227	172	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Dere10g0227	172	Coils	Coil	90	110	-	-
	Dere10g0227	172	Gene3D	-	14	83	IPR036879	GO:0003677\|GO:0046983
	Dere10g0227	172	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Dere10g0227	172	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dere10g0227	172	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dere10g0227	172	FunFam	Agamous-like MADS-box protein AGL62	13	79	-	-
	Dere10g0227	172	SUPERFAMILY	SRF-like	2	77	IPR036879	GO:0003677\|GO:0046983
	Dere10g0227	172	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0227	Dere-ChrDere10	4510248	4510766	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0227	1	164	Type I MADS-box Gene Family	AT2G34440	47.093	3.40e-44	142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Dere10g0227		SRF-TF	2.8e-23	No_clan