Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0205 ATGGGACAGTCTCGCTTTCCCGACCCACCGACGCTGCAGCCGTCGTTGCTCATGGCTGCTGGCAACGTCGCAGGCAGCAACAATGGCTTGAAAGAAAATCTCAAGCTCTCTGTGGAGGAGCTCTCTTATCACCAGCCCCAGCCCCAGCACCACCATCATCCACCGCCGCAATCAGAAGACACCGTCTTCGTCAACGGCGTCGCCGTAGCTGCATCAATGGACATTAGGCAACCTCAACATCTTGAAATTCCAATTCGATCAGATAGCACAAGCGCGTCCTCGGTGTTGTACGATCCTCTGTTTCATTTGAATCTGCCTTCGCAGCCTCCGGCGCTAAGAGAGATGTTTCAGTCTCTTCCTCCTGGCTATAGCTTACCAACTAGTTCCAGAAATGGTTCTGTTTTTGGTAGAGGCAATAAAATAGAGGGGAATGGGATTGTGTACCAAGATGGAGATGGGAGCCAACTTGATAATGGAGTTCTAAAATTCAACAGAGAGACAACTCGTGTTGGCCAAGAAAGAGAAGGAAAAGGCACCAATCATTTTGCCGCTGAGAAACAAAGAATAAAGCAATTGAATGACAAATTCACCGTCCTGAGGAGTCTGATCCCAAACCCCACCAAGGTGGATAGAGCATCTGTGGTGGGAGATGCCATTGAGTACATAAGAGCTGACATTGTTGGTGGAGAAGAAAAGATTTGGAATGGACAGGCGCGAAAGGCACAAAGCAGACGATGA 738 0.4905 MGQSRFPDPPTLQPSLLMAAGNVAGSNNGLKENLKLSVEELSYHQPQPQHHHHPPPQSEDTVFVNGVAVAASMDIRQPQHLEIPIRSDSTSASSVLYDPLFHLNLPSQPPALREMFQSLPPGYSLPTSSRNGSVFGRGNKIEGNGIVYQDGDGSQLDNGVLKFNRETTRVGQEREGKGTNHFAAEKQRIKQLNDKFTVLRSLIPNPTKVDRASVVGDAIEYIRADIVGGEEKIWNGQARKAQSRR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0205 245 Pfam Helix-loop-helix DNA-binding domain 179 223 IPR011598 GO:0046983
Dere10g0205 245 Gene3D - 166 224 IPR036638 GO:0046983
Dere10g0205 245 SMART finulus 182 233 IPR011598 GO:0046983
Dere10g0205 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Dere10g0205 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 223 IPR036638 GO:0046983
Dere10g0205 245 PANTHER TRANSCRIPTION FACTOR BHLH91 76 223 IPR045895 GO:0006355|GO:0048658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0205 Dere-ChrDere10 4214095 4215354 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0205 87 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.806 1.91e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere10g0205 HLH 6.3e-11 No_clan