Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0188 ATGGCCTCAAACACCATGGCTGGCTTGATCACTGGTTCTCATTCTAATTCCCGTTTTCCCAATGACTCTGATGAGCATCGACCTCCTGCCCGTCAACCTGCATCGAAAGTCTGTCGGGTTTGCGGGGATGAGATTGGACACAACGAAGATGGGGAGCTATTTGTGGCTTGCCATGTGTGTGGATTTCCAGTTTGTCGTCCCTGTTACGAGTATGAAAGGAGTGAAGGGAGCCAGTGCTGCCCTCAATGCAACACCCGCTATAAGCGTCACAAAGGTTGTCCTAGAGTGGCTGGGGGTGAAGAGGAGAACTTTGATGCAGATGATTTTGATGATGAGTTTCAGATTAAGAGTCGACATGATGAAACAGACAAGCAGCATGATGTCAATCACTTGGAAACTGGAGACTATAATCAACAGCAGTGGCAACCCAATGGACAAGCTTTCTCTTCAGCTGGAAGTGTGGCTGGTAAGGATTTTGAAGGAGAGAAAGAATTCTACAGCAATGCAGAATGGAAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAGAGAGGTCTAGTAAGCAAAGATGAAGGGAAAGATGACCAAGGTGAAGAAGATGACTACTTTTTGGCTGAAGCTAGGCAGCCTTTATGGCGTAAGGTCCCAATACCTTCAAACCTAATCAACCCGTATCGCATAGTCATTGTCATGCGGCTTGTTATATTAGTCTTCTTCTTCCGTTTCCGTATCTTGACTCCAGCATACGATGCATTTCCCTTATGGCTTATCTCTGTAATCTGTGAAATCTGGTTTGCCTTGTCTTGGATACTTGACCAATTCCCCAAATGGTTCCCAATTACTCGTGAAACTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGTGAAGGGGAGCCAAATAAGCTAGCCCCAGTTGATGTATTTGTGAGTACTGTTGACCCTTTGAAGGAACCTCCCATTATAACAGCGAACACAGTTCTATCAATCTTGGCTGTGGATTACCCTGTTGAGAAGGTCAGCTGCTATGTATCAGATGATGGTGCATCTATGCTTCTTTTTGATGCACTATCAGAAACTGCTGAATTTGCGAGGAGATGGGTTCCTTTTTGCAAAAAGTATAGCATTGAGCCAAGGGCTCCTGAATTCTATTTTTCTGAGAAAATTGATTACTTGAAAGATAAGGTGCAACCCACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTCAAGGTGAAAATTAATGCCTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAGGGGTGGGTGATGCAGGATGGTACCCCATGGCCTGGAAACAACACTCGTGATCATCCAGGAATGATTCAGGTCTATCTGGGAAGTGCTGGTGCACTGGATGTTGAAGGCAAGGAACTGCCACGACTTGTGTATATTTCACGTGAAAAACGTCCCGGCTATCAACACCACAAGAAAGCAGGTGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTCCTTACCAATGCACCTTTTATGCTGAATCTGGATTGTGACCACTACATCAACAATAGCAAGGCTGTTAGAGAAGCTATGTGCTTTTTAATGGATCCTCAGCTTGGAAAGAAGCTCTGCTATGTACAATTTCCACAAAGATTTGATGGTATTGATCGCCATGACAGATATGCTAACCGCAATACTGTTTTCTTCGATATCAATATGAAAGGCCTGGATGGAATTCAAGGCCCAGTGTATGTTGGTACTGGTTGTGTGTTCAATAGGCAGGCTTTATACGGCTATGATCCACCAGTATCTGAGAAAAGACCAAAGATGACTTGTGACTGCTGGCCTTCATGGTGTTGCTGTTGTTGTGGTGGTTCAAGAAAGTCTAAGTCGAAAAAATCATCAGGAAGAGGAATCTTTAGCAAATTATACACCAAGAAGAAGAAAATGATGGGGAAGAATTATGTTAGAAAAGGGTCTGGGCCTGCTTTTGATCTTGAAGAGATTGAAGAAGGACTTGAAGGTTATGACGAACTAGAGAAATCATCACTCATGTCACAGAAAAATTTTGAGAAACGATTTGGGCAGTCACCAGTTTTCATTGCTTCCACTCTGATGGAAGATGGTGGACTTCCAGAAGGCACCAATAGCCAATCACTGATTAAGGAGGCGATTCATGTTATAAGCTGTGGCTATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGGTGGATCTATGGCTCAGTCACAGAAGATATCCTGACAGGGTTTAAGATGCATTGCAGAGGATGGAAATCAGTGTACTGCATGCCAAAGAGAGCAGCTTTTAAGGGATCTGCTCCTATAAATCTATCAGATCGGTTACACCAAGTTCTGAGATGGGCTCTTGGTTCTGTTGAGATATGCCTCAGTCGCCATTGCCCACTATGGTATGGCTATGGAGGAAAATTGAAATGGTTAGAGAGGCTGGCTTACACCAATACCATTGTTTACCCATTCACTTCCATCCCTCTGCTTGCATACTGTGTAGTTCCAGCAGTGTGTCTTCTGACTGGAAAGTTCATCATTCCTACTCTGACAAACTTTGCTAGCGTTTGGTTTATGGCTCTATTTATCTCCATCATTTTAACTGGTGTGCTAGAGCTTCGGTGGAGTGGGGTTAGCATTCAAGACTGGTGGCGTAATGAGCAATTCTGGGTCATTGGAGGTGTTTCCGCACATCTTTTTGCTGTATTCCAAGGTCTCCTCAAAGTTCTTGCTGGAGTAGACACCAATTTCACTGTCACAGCTAAAGCAGCAGACGATGCTGAATTTGGGGAGCTCTATCTCTTCAAGTGGACTACTCTTCTCATCCCACCAACCACTCTTATAATTCTGAATATGGTGGGAGTTGTGGCTGGAATCTCTGATGCCATCAACAATGGCTCTGGTTCATGGGGACCTTTATTTGGGAAGCTATTTTTTGCCTTCTGGGTTATTGTCCACCTCTATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGGACTCCTACCATTGTAGTCCTCTGGTCAATTCTTCTGGCATCAATCTTCTCATTGATTTGGGTCCGGATTGATCCCTTCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTAGAATGCTAG 3147 0.4423 MASNTMAGLITGSHSNSRFPNDSDEHRPPARQPASKVCRVCGDEIGHNEDGELFVACHVCGFPVCRPCYEYERSEGSQCCPQCNTRYKRHKGCPRVAGGEEENFDADDFDDEFQIKSRHDETDKQHDVNHLETGDYNQQQWQPNGQAFSSAGSVAGKDFEGEKEFYSNAEWKERVEKWKVRQEKRGLVSKDEGKDDQGEEDDYFLAEARQPLWRKVPIPSNLINPYRIVIVMRLVILVFFFRFRILTPAYDAFPLWLISVICEIWFALSWILDQFPKWFPITRETYLDRLSIRFEREGEPNKLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVEKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKYSIEPRAPEFYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKSSGRGIFSKLYTKKKKMMGKNYVRKGSGPAFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCVVPAVCLLTGKFIIPTLTNFASVWFMALFISIILTGVLELRWSGVSIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNMVGVVAGISDAINNGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQCGVEC 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0188 1048 CDD mRING-HC-C4C4_CesA 36 86 - -
Dere10g0188 1048 FunFam Cellulose synthase 21 112 - -
Dere10g0188 1048 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 209 1015 - -
Dere10g0188 1048 SUPERFAMILY RING/U-box 23 104 - -
Dere10g0188 1048 MobiDBLite consensus disorder prediction 1 32 - -
Dere10g0188 1048 Pfam Zinc-binding RING-finger 29 103 IPR027934 -
Dere10g0188 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 112 IPR013083 -
Dere10g0188 1048 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 412 598 IPR029044 -
Dere10g0188 1048 FunFam Cellulose synthase 423 597 - -
Dere10g0188 1048 Pfam Cellulose synthase 306 1041 IPR005150 GO:0016020|GO:0016760|GO:0030244
Dere10g0188 1048 MobiDBLite consensus disorder prediction 1 18 - -
Dere10g0188 1048 SUPERFAMILY Nucleotide-diphospho-sugar transferases 319 835 IPR029044 -
Dere10g0188 1048 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0188 Dere-ChrDere10 4046114 4051807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0188 7 1048 Cell Wall Biosynthesis AT5G17420 66.448 0.0 1439