Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0186 ATGGCTGAATCTCCTACTCTCAGTCCTTCTCTCAGCCCCACCATGACCACGCCTTATGACAACACCACCATCATCATCAACCCTCACCAGCCATACTCCTTCAATCTCATGGTTCTCGTGGCCGCCATTATCTGTGCCTTTCTCTGCGCTCTAGGGCTCAACACCATGCTCCACTGTGTCTTCCAATGCGCCATCACTGAGCCTCTCCAATGGATTGCCTCTCGCAGGCTCAACTCAGGCCTCAAGAAGAAGGACATGGTGGCTCTCCCCACTTCAACCTACTACAGTACCAACCACACCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTGCAACAAACTGTGCTATCTGCTTAGCAGATTTCAGTGATGGTGACAGAATTAGGTTCCTTCCAAAGTGCAACCACAGATTTCATGTGGCTTGTATTGATAAGTGGTTACTTTCTCATTCCTCTTGCCCCACTTGCCGCCATTTTCTCAAGTCCAGTGACTCTCTTCACTCTCTTCGTCTTGTCATAAGTAGGAGTTAA 540 0.4889 MAESPTLSPSLSPTMTTPYDNTTIIINPHQPYSFNLMVLVAAIICAFLCALGLNTMLHCVFQCAITEPLQWIASRRLNSGLKKKDMVALPTSTYYSTNHTSSSSSSSSSSSSSSATNCAICLADFSDGDRIRFLPKCNHRFHVACIDKWLLSHSSCPTCRHFLKSSDSLHSLRLVISRS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0186 179 CDD RING-H2_EL5-like 118 160 - -
Dere10g0186 179 SMART ring_2 118 159 IPR001841 -
Dere10g0186 179 MobiDBLite consensus disorder prediction 95 114 - -
Dere10g0186 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 165 IPR013083 -
Dere10g0186 179 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Dere10g0186 179 Pfam Ring finger domain 117 160 IPR001841 -
Dere10g0186 179 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 27 163 - -
Dere10g0186 179 SUPERFAMILY RING/U-box 117 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0186 Dere-ChrDere10 4040876 4041415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0186 15 163 C3H Transcription Factor Family AT2G17450 40.000 4.97e-34 117