Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0146 ATGGCTTTTGAGAAGAGCTCATCTCCTGCTACCTCAGCTCTGTCTCTAAATCCTTCTGCAGCTATCGCTGCCATTGAGAGACTTAAACAAGAAGGAAGGGAGTCCGGGAATAATGTGAGAAAGATAGAGAACCGGAGGTGGGGAGAAACTGGAAAAGGAGAGAGTTTTGAGGGAATCGATGATCCCTGGTTTGGACTCTACGAGCAAAACTCATGTAACGTGAAACCAAGAAAAGAGCCTGAGAAGGATGAGAAACTGAGAGAGAAGGAGAGGCCTGGAGAAAGAGTGGTGATCCACGCGAAAGCAGGAGTGTATAATGAGAAGGTGGAGGTTGGATACAAGCTCAGGTTCAAGATGTTTGTTGGAAATGGAATGGACAGAACTATAATCATCAGTAGCAGAAGATTCATCCAAGGTTCTACCACTGTCGGTTCTGCCACTGTTGATATATTAGAGGACGACTTCTAG 468 0.4551 MAFEKSSSPATSALSLNPSAAIAAIERLKQEGRESGNNVRKIENRRWGETGKGESFEGIDDPWFGLYEQNSCNVKPRKEPEKDEKLREKERPGERVVIHAKAGVYNEKVEVGYKLRFKMFVGNGMDRTIIISSRRFIQGSTTVGSATVDILEDDF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0146 155 PANTHER PECTINESTERASE 89 155 - -
Dere10g0146 155 Pfam Pectinesterase 90 155 IPR000070 GO:0030599|GO:0042545
Dere10g0146 155 Coils Coil 25 45 - -
Dere10g0146 155 MobiDBLite consensus disorder prediction 74 93 - -
Dere10g0146 155 Gene3D - 85 155 IPR012334 -
Dere10g0146 155 SUPERFAMILY Pectin lyase-like 93 155 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0146 Dere-ChrDere10 2974919 2975962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0146 95 155 Carbohydrate Esterase AT3G60730 52.459 3.49e-14 67.0