Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0130 ATGAAGGCAAGCAAGGGGAAGAAGGCAGTAAAGAACTCAAAGGAAGCACTGAAGCCAGTTAATGATCGAAAGGTTGGCAAGCGAAAGGCTGCATCAAAACCTGACAAGAGTAGCACACGGAAGGCCAACAAAGAGAGGAATGCCAAGAAAGATCCCAACAAATCGAAAAGACCGCCTAGTGCTTTTCTCGTCTTCCTCGAGGAGTTCAGAAAGACCTTCAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGACTAGTGCTGAAAAAGCACCATATGAAGCCAAAGCTGCAAAAAAAAAAAGAAAGAGGTCCAAGTCTGAAGTGAATGATGAAGAGGATGAAGCCAGTGGAGAGGAGGGGCACCAAGAAGAGGAAGACGAGGAGGATGAAGAAGAGGATTCTGTATGCCGTAACACATTTCCACAGGGTCCTTGA 474 0.4599 MKASKGKKAVKNSKEALKPVNDRKVGKRKAASKPDKSSTRKANKERNAKKDPNKSKRPPSAFLVFLEEFRKTFKAENPNVKAVSAVGKAGGEKWKSMTSAEKAPYEAKAAKKKRKRSKSEVNDEEDEASGEEGHQEEEDEEDEEEDSVCRNTFPQGP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0130 157 Pfam HMG (high mobility group) box 56 116 IPR009071 -
Dere10g0130 157 Coils Coil 107 127 - -
Dere10g0130 157 CDD HMG-box_AtHMGB1-like 56 106 - -
Dere10g0130 157 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 55 124 IPR009071 -
Dere10g0130 157 MobiDBLite consensus disorder prediction 76 157 - -
Dere10g0130 157 SMART hmgende2 54 126 IPR009071 -
Dere10g0130 157 SUPERFAMILY HMG-box 43 115 IPR036910 -
Dere10g0130 157 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 146 IPR031061 -
Dere10g0130 157 Gene3D High mobility group box domain 37 123 IPR036910 -
Dere10g0130 157 MobiDBLite consensus disorder prediction 1 60 - -
Dere10g0130 157 MobiDBLite consensus disorder prediction 8 56 - -
Dere10g0130 157 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0130 Dere-ChrDere10 1665219 1665692 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere10g0130 HMG_box 1.8e-19 CL0114