Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0108 ATGGAGGCTAATGATGGGAATAGAGAGCAGACTGTGGATGTTCGATCAGTGGTTGAAGCTGTTTCTGCAGAAGATGGCGATGCTCCCGTGTACCAGGTTGAAAGCTTGTGCATGCGTTGCGGTGAAAACGGGATGACAAGATTTCTATTGACTTTAATTCCGCACTTCAGAAAGATTTTGTTGTCAGCTTTTGAATGCCCTCACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGAGAAATCCAACAACGTGGTTGCTGTTACAGTTTGGAGATCCCATCAGGCAATCAGAAGATGCTCGATCGACAAGTGGTAAAATCAGAATCTGCTACTATTAAGATACCAGAATTGGATTTTGAAATACCTCCCGAGGCTCAACGTGGTACTCTGTCAACGGTGGAAGGGATACTAGGACGAGCTGCTGATGAACTTCAGGCCCTTCAAGACGAGCGCAAAAAAGTTGATCCACAGACTGCTGAAGCAATTGATCAGTTCTTGATGAAATTGAGAGCTTGCACAGCCGGAGAGTTTTCATTAACTTTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAATCCGTTTGCTCCATCATCTGATCCATCACTGAGTATCAAATTCTATGAGCGTTCTCCTGAGCAACAAGCATTACTGGGATATCTTGTTGACTCATCACCAATTGAAGGGGCTCGTGATGTAGCATCAGCAGGGGAAGAAGCTGGGGTTGCCGATCAAGTTAGGAGAGAACCACATGGGTCAGTAGGGGCGGCTGCTGGTCATCGAGCCATTGCACAGAGTAATAGTGCCGAAATTGCAGAAGCCTTATTTAGATACACTGCACCGGAAGAGGTGATGACTTTCCCGTCAACCTGTGGTGCTTGTGCCACTAGCTGCGAGACTCGAATGTTTATCACCAAAATTCCGTACTTCCAGGAAGTCATTGTTATGGCATCCACCTGTGATGCTTGTGGTTACCGCAACTCTGAGTTAAAACCTGGCGGTCGAATTCCTGAAAAAGGAAAGAAGATTACCCTTTTTGTGAAAAATGTTAATGATCTAAGCCGTGATGTAATAAAGTCTGATACTGCCAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTAGCAAGTGGAACTCTAGGTGGAATTGTTACAACTGTTGAAGGTCTAATCACAAAAATTAGTGAAAGCCTTGAGAGGGTGCACGGATTTACTTTTGGAGACAGTCTTGATGAACATAAAAGGAACAAGTGGCTAGACTTTAAAGCAAGGCTAAGCAAGCTTCTTGGCTTGGAAGAACCTTGGACTTTAATTCTGGATGATGCGTTAGCCAATTCTTTCATAGCACCAGCAACTGATGATCTAAAAGATGACGATCAATTAACATTTGAGGAATATGAGAGGTCATGGGAGCAAAATGAAGAATTGGGTCTGAATGATATCGACACCACTTCTGCTGATGCTGCTTATGAATCAGCAACTGCTACGAAGTGA 1497 0.4389 MEANDGNREQTVDVRSVVEAVSAEDGDAPVYQVESLCMRCGENGMTRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQQRGCCYSLEIPSGNQKMLDRQVVKSESATIKIPELDFEIPPEAQRGTLSTVEGILGRAADELQALQDERKKVDPQTAEAIDQFLMKLRACTAGEFSLTFILDDPAGNSFIENPFAPSSDPSLSIKFYERSPEQQALLGYLVDSSPIEGARDVASAGEEAGVADQVRREPHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACATSCETRMFITKIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKKITLFVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHKRNKWLDFKARLSKLLGLEEPWTLILDDALANSFIAPATDDLKDDDQLTFEEYERSWEQNEELGLNDIDTTSADAAYESATATK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0108 498 SMART zpr1 35 195 IPR004457 GO:0008270
Dere10g0108 498 SMART zpr1 291 451 IPR004457 GO:0008270
Dere10g0108 498 FunFam Zinc finger protein ZPR1 25 80 - -
Dere10g0108 498 FunFam Zinc finger protein ZPR1 282 336 - -
Dere10g0108 498 FunFam zinc finger protein ZPR1 81 222 - -
Dere10g0108 498 NCBIfam ZPR1 zinc finger domain 292 483 IPR004457 GO:0008270
Dere10g0108 498 NCBIfam ZPR1 zinc finger domain 37 216 IPR004457 GO:0008270
Dere10g0108 498 Gene3D ZPR1, zinc finger domain 26 80 IPR042452 -
Dere10g0108 498 Gene3D ZPR1, zinc finger domain 281 336 IPR042452 -
Dere10g0108 498 FunFam Zinc finger protein ZPR1 337 479 - -
Dere10g0108 498 Pfam ZPR1 zinc-finger domain 291 449 IPR004457 GO:0008270
Dere10g0108 498 Pfam ZPR1 zinc-finger domain 35 194 IPR004457 GO:0008270
Dere10g0108 498 Gene3D ZPR1, A/B domain 337 479 IPR042451 -
Dere10g0108 498 Gene3D ZPR1, A/B domain 81 222 IPR042451 -
Dere10g0108 498 PANTHER ZINC FINGER PROTEIN ZPR1 15 493 IPR040141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0108 Dere-ChrDere10 1319562 1328455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0108 5 498 C2H2 Transcription Factor Family AT5G22480 76.364 0.0 783