Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0103 ATGGAGGATCACGTGGGTTTTGGTGGTGGAGCATCTATCAATATTGGAAGGGAAGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAAGAAGAAGAAGTATGGAAAGAAACTGAGCAGCCGGTGGTGGAAGAGTTGAAGGATGACTTTGATGAATCTTCAGTAAAATTGTTCTTCAAGGGCTTGTCTATAGCTGGGGTTGAAAATTCCAGTTCTGGGTATTCTGGAATTGGAGTATTCATGGAAAGATCATCTGTTCTTCCTGTTATCCGGGTGCAGAAAAAGCTTGACTTTTATGCAGAAAAACCATTAGCCGACTACTTGGCTCTCATGGATGGCTTGCTAGAAGCTGTGCAGAATAACGTCCGCCGGGTTTATGCTTTTACAGATTCTGAGTTATTGTACGATCAGATAACATTTGAGAAGAACCTTGAGAAGCCGCTTTTCATAGCACTGAGAGAAAGGGTTCTGGAACACGCCAATAATTTTGAAAGTTTTGTTCTGAATCTTGTTCCCAGTATTGATCTTGAGCAGCCACTGCAATTAGCCAAAGTAGCTATTGGGATTGTCTCTCTTCCTTTAAACGGTGAGAAGGTGCTTGAAAGTTGTTCTATTTGTTGTGAGGACAAGCCACTGCCAATAATGATCACCATGAAATGTTCACACAAGTTTTGCTCACATTGTTTGAGGGCTTATGTTGATGGAAAGATACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAAGATGCAAATATTACATCTCTACCGCAGAATGCAGGTCTTTTCTTCCATTCTCCTCTTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATGTTCTCCATTCAGATAGAATTTACTGCCCATTTCCTAATTGTTCTGTTCTCCTTGATCCTCGGGAATGTTTATCAGCTAGGGCTAGTTCATCTAGCCAATCAGATAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTCTGAGCTGTGAAGAGTACCAGAATTTACCTGAGGAGGAAAGAGATGCTTCTGACATTACCTTGCATCGCCTTGCTCAAAATAAAAGATGGAAGCGTTGTCAACAGTGTCGTCGGATGATTGAGCTTACCCACGGTTGTTATCACATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGCGCTGAATACCGGGATGGCCAACAGACTTGTCAGTGTGTGTTCTGGGATGAAGACAATTCTGAAGACTCGGTAACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACCTTCAATTCTCTCCCCATGATCATGGATGCATACTCGGACCAAGAACGGTCACAGCTTGCACTTATACAAAGGTTCCTTGCTGGGGGTTTCAGTCTGAGTGACCATCATCCTTACCAATCTCCTCCTCGCTGTACAGATTCCTATGTTGATGCCATGAAGGATCTCCATCAGCTTCCGTGGCTTGAGAGATTTGTCTCTGTGATCAGTGACAACTACTACGATGATTATATTCAGTAA 1557 0.4297 MEDHVGFGGGASINIGREEEEDEFCSCCEDEEEEVWKETEQPVVEELKDDFDESSVKLFFKGLSIAGVENSSSGYSGIGVFMERSSVLPVIRVQKKLDFYAEKPLADYLALMDGLLEAVQNNVRRVYAFTDSELLYDQITFEKNLEKPLFIALRERVLEHANNFESFVLNLVPSIDLEQPLQLAKVAIGIVSLPLNGEKVLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDGKIQSCQVPIRCPQPRCKYYISTAECRSFLPFSSFESLEKALAEANVLHSDRIYCPFPNCSVLLDPRECLSARASSSSQSDNSCVECPVCQRFICVDCEVPWHSSLSCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDNYYDDYIQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0103 518 Gene3D - 340 467 - -
Dere10g0103 518 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Dere10g0103 518 SUPERFAMILY RING/U-box 276 348 - -
Dere10g0103 518 CDD Rcat_RBR_unk 369 405 - -
Dere10g0103 518 SMART ibrneu5 353 412 IPR002867 GO:0008270
Dere10g0103 518 SMART ibrneu5 271 343 IPR002867 GO:0008270
Dere10g0103 518 CDD BRcat_RBR_unk 285 346 - -
Dere10g0103 518 SUPERFAMILY Ribonuclease H-like 71 173 IPR012337 -
Dere10g0103 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 283 IPR013083 -
Dere10g0103 518 FunFam RBR-type E3 ubiquitin transferase 341 466 - -
Dere10g0103 518 Pfam Reverse transcriptase-like 67 173 IPR002156 GO:0003676|GO:0004523
Dere10g0103 518 FunFam RBR-type E3 ubiquitin transferase 56 190 - -
Dere10g0103 518 SUPERFAMILY RING/U-box 356 420 - -
Dere10g0103 518 FunFam RBR-type E3 ubiquitin transferase 199 284 - -
Dere10g0103 518 SUPERFAMILY RING/U-box 202 280 - -
Dere10g0103 518 ProSiteProfiles Zinc finger RING-type profile. 204 251 IPR001841 -
Dere10g0103 518 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 465 IPR031127 GO:0004842|GO:0016567
Dere10g0103 518 Gene3D - 57 190 IPR036397 GO:0003676
Dere10g0103 518 ProSiteProfiles TRIAD supradomain profile. 200 418 IPR044066 -
Dere10g0103 518 Pfam IBR domain, a half RING-finger domain 282 343 IPR002867 GO:0008270
Dere10g0103 518 Pfam IBR domain, a half RING-finger domain 363 412 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0103 Dere-ChrDere10 1262888 1267061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0103 30 403 C3H Transcription Factor Family AT2G19610 26.582 6.13e-32 125