Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0098 ATGGAAAGAGGTGGATACGGTTCCGGTTATGGTAGAGGTGGCCACAGAGGAAGGGGCAGAGGCTGGAGTGGCGGAAGAGGAGAAGGGGGAAGAGGAGAAGGGGGAAGAGGGTTTCGTCATCAATCGCATCCTGAAAGAGGGCGATCGTGGTCTGGCCCCGGCCAAGAGACGAGGAGAGGTAGTTATGAAAGAGGAGGAGCTGAAAGAGGAAGAGGCAGAGGCAGACATGGTCATTCTCGCCCTTTGCCTCCTGATCCAGTTCGTGAACCTGTTTATTCTCGCTCTTCGTTGCCCGATGCAGTTCCCGATCCTGTTCATTCTCGCCATTCTGCTCCTGATCCAGATCTACACCTCCTTGTTGATTGTCTAGTTACTGAATTGGAAAGGCTGCAAATTTCACAACAGCAAGGATCAGCCTCATCCAGTACCCAGGAAACAAAAGGCAAAATTCTACCAGTTCACAGACCTGACAAGGGTGGTACACTAGCAACTCGATCTAGCAGGCTTCGTGTCAATCACTTTCCTCTCAAGTTCAAACCTAATAGTATAATCATGCATTATAATGTTGATGTGAAACCCAAGATACCTGCCAAAAATGGTCGACCACAAAAAATATCTAAGTCTGACCTGTCCATGATTAGGGAGAAATTGTTTTCTGATGATCCTGGAAGGTTACCATTGGGAAAGACTGCATATGATGGAGAAAAAAATATTTTCAGTGCAGTTCTGTTACCGGAAGAAACCTTTATGGTGACTATCTCTGAAGGAGAGGATGAAAGAAGCAGGACATACATGGTTACCTTGACGCTCGTTAATAAACTTGAGCTTTGCAGGTTAAAGGAATACCTCAATAAGGAGGTTTTGTCAATTCCCAGGGACATTTTACAAGGGATGGATGTGGTGGTGAAGGAAAATCCTGCTAGGCGTGCAATCTCTTTGGGACGAAGCTTTTATCCGACAAATCCTCCTTTGTTACACCAGGATCTTCGTTATGGTTTAATTGCATTAGGAGGGTTTCAGAACAGTCTGAAGCCAACATCTCAAGGTCTATCCTTATGCCTTGACTACTCTGTTTTGTCTTTCCGACGACAAATGGCTGTCTTGGATTTTCTTCATGAGCGTATTCCATATTTTAATTTGGATGCGTTTGAACAGTTCAAGTTTGATGTTGGGAATGAACTGATTGGGTTGAAAGTAAATGTGACGCACCGTAGAACCAAACAGAAATACACCATTTTAAGGTTAACAGACAGGAAAACAAGGGATATCTCTTTCCCTTTAAAGGACCCAGAGGGCCGGAATGAGGTGCAGGAGACTCGAATTGTTGACTATTACAACAATAGATACAACAAAGACATTGTACACAAAGATATTCCTTGCTTAGATTTTGGGAAAGGCAACTATGTGCCTATGGAGTTCTGCATATTAGTTGAGGGTCAAAGATTTCCTAAGGAGCATTTGGACAGGGATGCTGCCAAGGTGTTGAAAGATATGTCATTGGCTCGTCCGAAGGAGAGACAGAGTTTAATACAGAAGATGGTGGAGTCAAGTGATGGGCCTTGCGGGGGTGGTATTATTCAAAGTTTTGGAATGGAAATCAAAACAACCATGACAGCTGTTGTAGGACGCATCATTGAGCCACCAAAATTGAAGTTAGGTAATCCAAATGGCCAGATTATGACCATAACATTGGATCCGGAGAAATGTCATTGGAATCTAGTTGGAAAATCTGTGGTAGAAGGCAAGTCAGTTGAGCGTTGGGGCATTATTGATTTCACCAGCTTTGGGCAGTCTCGATTCAGGTTAAGGAATGAGGATTTCATTTATAAACTTATGGGAAAATATGGCAAATTGGGTATTGACATGAAGAAGCCTATTTGGTATGAACGTTCTTCAATGGAACAACTTGAGAGTTATGAATCGCTATATGAATTACTTGAAAAAGTTATCAATAAAGGTTATGAAAGAAGCCGTGGCCGACTGCAATTTATTCTGTGTGTCATGGCTAACAAACATGCTGGGTATAAGATTCTAAAGTGGATTTCTGAGACCAAAGTTGGTATTGTGACGCAGTGCTGTTTGTCTGGTAATGCTAATGAGGGAAAAGATCAGAATCTTACAAATCTTGCTCTTAAAATCAATGCCAAACTTGGAGGTAGTAATTTTGAGCTCAATAATAGGCTTCCTTGTTTTGAGGGAGATGATCATGTTATGTTTATAGGGGCTGATGTTAATCATCCAGCTGCTCGAGATAGTAGTAGTCCATCAATTGCTGCTGTGGTTGCAACTGTCAATTGGCCTGCTGCAAATCGCTATGCAGCACGTGTTTGCTCTCAATTCCATCGGAAAGAAAAAATATTGAACTTTGGAGAAGTTTGTCTTGAGCTTGTTATTTGTTATGATAGGTTGAACGGGGTGAGACCAAAAAAAATTGTTATTTTTCGTGATGGGGTCAGTGAGGGACAGTTTGATATGGTTCTTAATGAAGAGCTACAAGATGTGAAAAGTGCATTCCAACGTGTAAATTACTTCCCAACCATCACTCTCATTGTAGCACAAAAGCGACATCAGACTCGATTCTTTTTAGAGGGTCCTTCTTATGGTAATGTGTCTCCGGGAACAGTTGTGGACAAAACAGTCATACATCCTTTTGAGTTTGACTTTTACCTTTGTAGTCACTATGGGAGCTTAGGTACCAGTAAGCCCACTCACTATCATGTCTTATGGGATGAACACAGGTTTACGTCTGATGAATTACAGAAGCTTATATATGATATGTGCTTTACCTATGCAAGGTGCACTAAACCTGTGTCTTTAGTCACTCCTGTGTACTATGCTGACCATGTTGCCTATAGAGGACGCTTATACCATGAAGCAAGGACTGCAGTGCTGCCCGCAGATTTGACAGCATCTTCTTCATCTCTGTTTTCGTCACCACCTTCATCCATCGATTCAAATGAACATGGTTTTTACAGGCTACATGCGAACCTGCAAGACGTGATGTTCTTCATCTAA 3015 0.4232 MERGGYGSGYGRGGHRGRGRGWSGGRGEGGRGEGGRGFRHQSHPERGRSWSGPGQETRRGSYERGGAERGRGRGRHGHSRPLPPDPVREPVYSRSSLPDAVPDPVHSRHSAPDPDLHLLVDCLVTELERLQISQQQGSASSSTQETKGKILPVHRPDKGGTLATRSSRLRVNHFPLKFKPNSIIMHYNVDVKPKIPAKNGRPQKISKSDLSMIREKLFSDDPGRLPLGKTAYDGEKNIFSAVLLPEETFMVTISEGEDERSRTYMVTLTLVNKLELCRLKEYLNKEVLSIPRDILQGMDVVVKENPARRAISLGRSFYPTNPPLLHQDLRYGLIALGGFQNSLKPTSQGLSLCLDYSVLSFRRQMAVLDFLHERIPYFNLDAFEQFKFDVGNELIGLKVNVTHRRTKQKYTILRLTDRKTRDISFPLKDPEGRNEVQETRIVDYYNNRYNKDIVHKDIPCLDFGKGNYVPMEFCILVEGQRFPKEHLDRDAAKVLKDMSLARPKERQSLIQKMVESSDGPCGGGIIQSFGMEIKTTMTAVVGRIIEPPKLKLGNPNGQIMTITLDPEKCHWNLVGKSVVEGKSVERWGIIDFTSFGQSRFRLRNEDFIYKLMGKYGKLGIDMKKPIWYERSSMEQLESYESLYELLEKVINKGYERSRGRLQFILCVMANKHAGYKILKWISETKVGIVTQCCLSGNANEGKDQNLTNLALKINAKLGGSNFELNNRLPCFEGDDHVMFIGADVNHPAARDSSSPSIAAVVATVNWPAANRYAARVCSQFHRKEKILNFGEVCLELVICYDRLNGVRPKKIVIFRDGVSEGQFDMVLNEELQDVKSAFQRVNYFPTITLIVAQKRHQTRFFLEGPSYGNVSPGTVVDKTVIHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHRFTSDELQKLIYDMCFTYARCTKPVSLVTPVYYADHVAYRGRLYHEARTAVLPADLTASSSSLFSSPPSSIDSNEHGFYRLHANLQDVMFFI 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0098 1004 Pfam Piwi domain 664 954 IPR003165 GO:0003676
Dere10g0098 1004 SUPERFAMILY PAZ domain 361 516 IPR036085 GO:0005515
Dere10g0098 1004 Gene3D - 544 726 - -
Dere10g0098 1004 SMART PAZ_2_a_3 365 495 IPR003100 GO:0005515
Dere10g0098 1004 SMART Piwi_a_2 663 957 IPR003165 GO:0003676
Dere10g0098 1004 Gene3D - 732 1004 IPR036397 GO:0003676
Dere10g0098 1004 ProSiteProfiles Piwi domain profile. 663 958 IPR003165 GO:0003676
Dere10g0098 1004 Pfam Argonaute linker 1 domain 313 362 IPR014811 -
Dere10g0098 1004 ProSiteProfiles PAZ domain profile. 393 478 IPR003100 GO:0005515
Dere10g0098 1004 SMART DUF1785_2 311 364 IPR014811 -
Dere10g0098 1004 Pfam N-terminal domain of argonaute 167 302 IPR032474 -
Dere10g0098 1004 Pfam PAZ domain 385 490 IPR003100 GO:0005515
Dere10g0098 1004 MobiDBLite consensus disorder prediction 1 114 - -
Dere10g0098 1004 SUPERFAMILY Ribonuclease H-like 657 958 IPR012337 -
Dere10g0098 1004 CDD PAZ_argonaute_like 365 477 - -
Dere10g0098 1004 MobiDBLite consensus disorder prediction 133 148 - -
Dere10g0098 1004 MobiDBLite consensus disorder prediction 61 83 - -
Dere10g0098 1004 MobiDBLite consensus disorder prediction 32 46 - -
Dere10g0098 1004 CDD Piwi_ago-like 525 956 IPR045246 -
Dere10g0098 1004 Gene3D paz domain 360 482 - -
Dere10g0098 1004 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 166 959 - -
Dere10g0098 1004 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0098 Dere-ChrDere10 1218272 1223123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0098 86 962 Eukaryotic Initiation Factors Gene Family AT1G48410 34.405 1.62e-144 456