Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0097 ATGGCTCATTCAGCTGAACCTTCATCATCTTTAAGCTTTACCTCATCTTCCCACTTGTCAAATGGCTCTGTTAGCCACAACATGTGCTCTTCTCACGGCTCTGATCCTGGACCTAATCTTGAAGTGATCAGTTTGACTAAGCTTAGCTCTAGTTTGGAGCAGCTTTTGGTTGAATCTGATATTGATTTTAGTGATGCTGACGTCGTTGTTGAAGGAATACCGGTTGGTGTTCATAGATGTATTCTAGCCTCTAGAAGCAAGTTTTTCCTTGAATTATTCAAGAAAGATAAAGGATCTTCGGAGAAGGAAGGAAAATTAAAGTATTGCATGAGTGATTTGTTGCCATATGGCAAGGTGGGATATGAAGCCTTCCAGATATTCTTGGGTTATCTGTATACTGGAAAACTCAAGCCCTCTCCAATGGAAGTATCAACTTGTGTTGATAATGTTTGTGTTCATGATGCTTGTAGACCAGCAATAAATTTTGCTGTGGAGTTGATGTACGCCTCTTCAATTTTTCAAATACCAGAATTGGTATCACTTTTTCAGCGACGCCTCCTTAATTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATCCCAATACTCATTGTTGCTTTCCATTGTCAATTGAGTCAACTTGTTGCTCAATGTGTTGATAGGGTAGCACGATCAGACCTTGATCACATCTCAATTGAGAAAGAGCTTCCCTTAGAACTTGCAGAGAATGTTAAACTGCTTCGCCGAAACTCCCAGCATGATGTTGAAAATAATGCTTCTGTAGTTGACGATCCTTTGCGTCAAAAGAGAATCACTAGAATACATAAGGCACTAGATTCAGATGATGTTGAGCTTGTTAAGCTACTTTTAACTGAATCAGATATAACATTAGATGCAGCCAATGCTCTTCATTATGCTGCAGCCTACTGTGATCCTAAGGTTGTTTCTGAAGTTCTTGGTTTGGAACTGGCTGATGTCAATCTTCGGAATTCACGTGGCTACACTGTGCTTCATATTGCTGCCATGCGTAAAGAACCTTCAATTATAGTATCCCTTCTTACAAAAGGGGCTTGTGCATCAGACGTGACTTTTGATGGTCAGAGTGCTGTTAGTATCTGCAGGAGATTGACAAGACCGAAGGACTATCATGCGAAAACAGAGCAGGGGAAGGAGACAAACAAAGATCGGATATGCATTGATGTTCTTGAAAGAGAAATGCGGAGAAATCCAATGGCTGGGAATGCCTCGATTTCTTCCCACACAATGGCTGATGATCTGCACATGAAGCTGCTATATCTTGAGAATAGAGTGGCATTTGCTAGACTATTCTTCCCTACAGAAGCCAAACTAGCTATGGACATTGCACATGCGCAAACAACATCTGAGTTTGCAGGTCTCTCTGCATCAAAAGGTTCAAATGGGAATTTGAGGGAGGTGGATCTAAATGAGACTCCCCTGGTGCAAAACAAAAGACTTCTTTCTAGAATGGAGGCCCTTATGAAAACAGTTGAGATGGGCCGGCGCTATTTTCCTCACTGCTCGGAAGTGCTCGACAAGTTCATGGAGGATGACCTGCCTGATTTATTTTACCTGGAGAAGGGCACCCAAGAAGAGCAGAGAATCAAGAGGGCACGTTTCATGGAGCTCAAAGATGATGTTCAGAAGGCTTTCAACAAGGACAAGGCCGAGATAACCCGCGCTGGGATTGCGTCTTCATCATCTTCGTCATCTTTGAGAGGCTCTGTACATTACAAGGCTAGAAAAGTGTGA 1767 0.4239 MAHSAEPSSSLSFTSSSHLSNGSVSHNMCSSHGSDPGPNLEVISLTKLSSSLEQLLVESDIDFSDADVVVEGIPVGVHRCILASRSKFFLELFKKDKGSSEKEGKLKYCMSDLLPYGKVGYEAFQIFLGYLYTGKLKPSPMEVSTCVDNVCVHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILIVAFHCQLSQLVAQCVDRVARSDLDHISIEKELPLELAENVKLLRRNSQHDVENNASVVDDPLRQKRITRIHKALDSDDVELVKLLLTESDITLDAANALHYAAAYCDPKVVSEVLGLELADVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASDVTFDGQSAVSICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREMRRNPMAGNASISSHTMADDLHMKLLYLENRVAFARLFFPTEAKLAMDIAHAQTTSEFAGLSASKGSNGNLREVDLNETPLVQNKRLLSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTQEEQRIKRARFMELKDDVQKAFNKDKAEITRAGIASSSSSSSLRGSVHYKARKV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0097 588 SUPERFAMILY Ankyrin repeat 267 374 IPR036770 -
Dere10g0097 588 Pfam NPR1/NIM1 like defence protein C terminal 373 575 IPR021094 -
Dere10g0097 588 FunFam regulatory protein NPR3-like 265 405 - -
Dere10g0097 588 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
Dere10g0097 588 FunFam Regulatory protein NPR3 38 222 - -
Dere10g0097 588 CDD BTB_POZ_NPR_plant 46 190 - -
Dere10g0097 588 Pfam BTB/POZ domain 62 179 IPR000210 GO:0005515
Dere10g0097 588 Pfam Ankyrin repeats (3 copies) 274 356 IPR002110 GO:0005515
Dere10g0097 588 Gene3D - 265 405 IPR036770 -
Dere10g0097 588 MobiDBLite consensus disorder prediction 566 580 - -
Dere10g0097 588 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Dere10g0097 588 PANTHER REGULATORY PROTEIN NPR3 10 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Dere10g0097 588 SMART BTB_4 64 190 IPR000210 GO:0005515
Dere10g0097 588 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Dere10g0097 588 MobiDBLite consensus disorder prediction 566 588 - -
Dere10g0097 588 SUPERFAMILY POZ domain 62 188 IPR011333 -
Dere10g0097 588 Gene3D Potassium Channel Kv1.1; Chain A 40 222 IPR011333 -
Dere10g0097 588 SMART ANK_2a 331 363 IPR002110 GO:0005515
Dere10g0097 588 SMART ANK_2a 268 296 IPR002110 GO:0005515
Dere10g0097 588 SMART ANK_2a 297 327 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0097 Dere-ChrDere10 1211311 1216224 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere10g0097 NPR1_like_C 4.6e-97 No_clan