Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0092 ATGAAGGAGGGAGGGAGGAAGCAAGGAGCAGCGTCACCGTGTGCGGCGTGCAAGCTTCTGCGCAGAAGATGCGCTCAGGACTGCGTCTTCGCTCCCTACTTTCCGGCCGACGAGCCCCACAAGTTCGCTAACGTTCACAGAGTCTTCGGTGCCAGTAATGTCAACAAGATGCTTCAGGAGCTACCAGTGCATCAAAGAGGAGATGCAGTGAGCAGTATGGTGTATGAGGCTAATGCAAGAGTGAGAGATCCTGTGTATGGTTGTGTTGGGGCCATCTCTTCTCTTCAGCAACAGATTGATGTGCTTCAGACCCAATTGGCTCTGGCCCAAGCTGAGGTTGTGCATCTTAGGATTAGCCAGACTGCTTCCCTCTCCAACCATGGGCTCAGCCCAACCAGCCCATCCAACAGTGGGTCCCCTCCGCCACCGTCCAAGCCCATGGGCTCACAGCCCAAGCCCATCTTTGACTTGGACATGGTGGTGGACCACTCCACGTATGCTGATTCAATTTGGTCTTGCTAACCAACGGCGGTGGTGAAAGTAGCAGTGGCGGAGGGGTTCGCCCGCATAGTTAATTTGGCATGGGAAAGGCTAAGATTTGAATTCAGATCAGTTTCAATCTCGTCTCGTTCACAGGCATTACAAAGTAAAATATACAGATCCACCACAGAAATATCGCAGAGCATCAATCTAATGTTTCATAGAAATTTGCACAGCATTATGGAGAACTAA 732 0.5109 MKEGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRISQTASLSNHGLSPTSPSNSGSPPPPSKPMGSQPKPIFDLDMVVDHSTYADSIWSCXPTAVVKVAVAEGFARIVNLAWERLRFEFRSVSISSRSQALQSKIYRSTTEISQSINLMFHRNLHSIMEN 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0092 243 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Dere10g0092 243 Coils Coil 92 112 - -
Dere10g0092 243 MobiDBLite consensus disorder prediction 135 149 - -
Dere10g0092 243 MobiDBLite consensus disorder prediction 125 153 - -
Dere10g0092 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 138 - -
Dere10g0092 243 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0092 Dere-ChrDere10 1147162 1151567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0092 1 173 AS2 family AT1G31320 77.011 1.86e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere10g0092 LOB 3.6e-43 No_clan