Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0089 ATGGTGTCCGGCATACGCAGGCTCAAGCACTCCTTTTCGACCCTCTTCTCTTCTTCCTCGAATTCCGATTTGTCGTCTCAGCCTCCTTTCCCCGCCGTCGCGGATTCCGACAACCAACCGGAACCGCCGCCTCCGCCGTCTCATCGCCACTCTGTTTCCGATGCCGACCGCACCTCTTCCGCCTCCCAGTTGTCTCGCTCCTCTTCATCGTTTTCCCGCCTGTCTCGTGCTTTCAGCATTCGATCCAGCAAGAAGACTTGCACCATTTGCTTGAGTGAATTAAAAATAGGGCAAGGCCGAGCTATCTTTGTTGCAGAGTGTTCCCATTCGTTCCATTTCAATTGTATTGCTTCCAATGTCAGACATGGAAACCATGTCTGTCCCATCTGTCGCTCCAAATGGAAAGAAATACCATCTCAGGCTCCAACGAATGTTCCTGCTGCTGTCCAACATGGCAGGGGAAGGGCCAGAGCGCCACTTACTTCATCACCTCCCTTAATGCAGTCCTTGGCAATCCATGAGCCTCGTCACTTCTCTGATGATGAGCCACTTCCAGTCTCAGCAGCCTCTGCGGAACATGCTTCATCTGCCCCTAATGTTGTGGCTATCAAGTCCTTTACAGAGTATCCTGTTGTCTCTGCATCTGAAGCTCGTTCAGAATTCGCAGTTCTTGCCAGCGTTTGCGCACCGGCACTTTCTCAGCGGGATCGTGCACCTGTGGACCTGGTTACAGTGCTTGACATCAGTGGCAGCATGGCGGGGTCAAAGCTTTCACTTCTCAAGCATGCTGTTCATTTTGTCATTCAGAACTTGAATGCTTCTGACAGACTTTCGATAGTTGTTTTCTCCTCTACAGCTCTCAGAATTTTTCCACTTCGAAGGATGACTGACAGTGCAAGAGCTGATGCAACCCTTGCCGTCAATTCTCTGTCAACCGATGGTGGAACCAACGTCTATAATGGGCTCAGAAAAGGAGTTCGTGTCCTTGAAGAACGGCGAGAGCGAAACCCAGTTGCTAGCATCGTACTTCTTTCTGATGGAAGGTCTCAACCTAGTGTATTTCAGCCATCGGGACGCCTGTACCCATTGCCTGCTTGCATTTCCTCCTATCATAATAAATATGGGGATTCGGTCTCTCAGCCAACTATTCCGGTCCACTCTTTTGGCTTTGGTACAGACCATGATTCCACTGCCTTGCACGCTATATCTGATGCATCTGGTGGCACTTTTTCCTTCATCGAGTCAGTTGGCATGGTGCAAGATGCTTTTGCTAGGTGCATTGGTGGTCTTCTGAGTGTTGTGGCTCAAGAGCTACAACTCACTGTGAAAACAATTACACCAGGTGTGCAAATCAGTTCAGTACGCTCGGGGAGATACATCAGTGAAATTTGTGATGAGGGTAAGCGATGTGTCATCGATGTGGGTAACATGTACGCGGAAGAGGAGAAGGGATTTCTGTTGTACCTATCAATTCCAGCAATTCCGGCCAGTGAAGGAGTAGAAATGGAGGCAAAGACTTCTTTGCTGGACATCACATGCCAGTACAAAGATTCAGCATCTGAGGAGGAGCTAGTTAAGGTTGAGGGCGAGAGGGTGGAGATACAGAGATCAGTGGGTTCATCACAGCCTACAGACATGACAGTATCCTTGGAGGTTGATAGACATCGAAATAGACTCTTGGTGGCTGATGGGATAGCAGAAGCACAGAGGCTGGCTGAGAGGGGAGACTTGCAGGGTGCAAAAGCTTTGCTGGAAGCTAAAAGATCAATTCTATCATCCTCAGCCTCAGCCTTAGCTGGGGATGCTATCTGCACCTGGCTTGATGCTGAACTGAGAGAAACTAGGGAGAGGATGGAAAGCAGGGCACAATATGAACATACTGGAAGGGCTTATGTTCTCTCAGGGTTGAGCTCACATTCATGGCAGAGGTCAACAACAAGGGGAGACTCCTTAACCCAGACATTTGTCAGTGGCGATGTCAGAGACCCAGCAGCAAGCGGGCCTATTGGGTATGACACGCCTTCAATGGTTAGCATGGTGAGAATGTCACAGAATCTTAGCCCTCTAATTCTGCCTAGCTGCTTCTGTAGAATCATTTGGTATACAATTTTGAAGTGA 2118 0.492 MVSGIRRLKHSFSTLFSSSSNSDLSSQPPFPAVADSDNQPEPPPPPSHRHSVSDADRTSSASQLSRSSSSFSRLSRAFSIRSSKKTCTICLSELKIGQGRAIFVAECSHSFHFNCIASNVRHGNHVCPICRSKWKEIPSQAPTNVPAAVQHGRGRARAPLTSSPPLMQSLAIHEPRHFSDDEPLPVSAASAEHASSAPNVVAIKSFTEYPVVSASEARSEFAVLASVCAPALSQRDRAPVDLVTVLDISGSMAGSKLSLLKHAVHFVIQNLNASDRLSIVVFSSTALRIFPLRRMTDSARADATLAVNSLSTDGGTNVYNGLRKGVRVLEERRERNPVASIVLLSDGRSQPSVFQPSGRLYPLPACISSYHNKYGDSVSQPTIPVHSFGFGTDHDSTALHAISDASGGTFSFIESVGMVQDAFARCIGGLLSVVAQELQLTVKTITPGVQISSVRSGRYISEICDEGKRCVIDVGNMYAEEEKGFLLYLSIPAIPASEGVEMEAKTSLLDITCQYKDSASEEELVKVEGERVEIQRSVGSSQPTDMTVSLEVDRHRNRLLVADGIAEAQRLAERGDLQGAKALLEAKRSILSSSASALAGDAICTWLDAELRETRERMESRAQYEHTGRAYVLSGLSSHSWQRSTTRGDSLTQTFVSGDVRDPAASGPIGYDTPSMVSMVRMSQNLSPLILPSCFCRIIWYTILK 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0089 705 CDD RING-H2_WAVH2 81 136 - -
Dere10g0089 705 ProSiteProfiles Zinc finger RING-type profile. 87 131 IPR001841 -
Dere10g0089 705 SMART VWA_4 239 425 IPR002035 -
Dere10g0089 705 Pfam RING-like zinc finger 87 116 IPR001841 -
Dere10g0089 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 136 IPR013083 -
Dere10g0089 705 SUPERFAMILY vWA-like 237 427 IPR036465 -
Dere10g0089 705 ProSiteProfiles VWFA domain profile. 241 434 IPR002035 -
Dere10g0089 705 Pfam VWA / Hh protein intein-like 601 684 IPR032838 -
Dere10g0089 705 MobiDBLite consensus disorder prediction 16 33 - -
Dere10g0089 705 Gene3D von Willebrand factor, type A domain 241 428 IPR036465 -
Dere10g0089 705 MobiDBLite consensus disorder prediction 35 49 - -
Dere10g0089 705 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 85 685 - -
Dere10g0089 705 SUPERFAMILY RING/U-box 84 144 - -
Dere10g0089 705 Pfam von Willebrand factor type A domain 241 421 IPR002035 -
Dere10g0089 705 SMART ring_2 87 130 IPR001841 -
Dere10g0089 705 MobiDBLite consensus disorder prediction 16 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0089 Dere-ChrDere10 1124173 1134264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0089 74 132 C3H Transcription Factor Family AT1G15100 37.500 3.30e-06 45.8