Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0088 ATGGCCGCAGACAAGGCAGCACTTCTAGCCTTCAAATCTTGTATCACTTCAGACCCTAACAATGTCTTGGCCACTAATTGGTCCACGTCCTCCTCTGTATGCAACTGGGTTGGGGTCACATGTGATGACCCCTTCCATGAAAGAGTCACCGCCTTAAATCTATCAGGCATGAGCTTAAATGGTACCATAACACCCCATTTAGGAAACTTAACTTCCCTTCTTCATCTTGATCTTCATGACAATAACTTCCATGGAGATTTACCTCAAGAGTTGGCCTTGTTAAGGAGACTGAAGTTGATAAACTTTTGTAATAACAAGTTTAATGGAAAATTTCCCACATGGACGGGGGAGTTTTCTGAGCTCCAAACTTTGAGTCTTTGTGGTAACAGTTTTGCTGGTCCCATTCCTTCATCTCTATCCAGATTGTCCAAGTTAGAGACATTGAATTTGAGCTCTACTTTCATAGAAGGCAACATTCCACCTGAGCTTGGTAGGATTCGTAATTTGAAGGTTTTGGATTTGGCACACGCTCGCCTTTCTTTTAATATACCTTCTTCAATCTTCAACATCTCCACACTCCAGGTGCTCCATTTGGGGTATAACTCCTTAAAAGGAAACATTCCACGAGAAATTGATCTTCCACAACTGAGAAGGATCAACTTGAGTAAAAACAACCTTTCAGGAGCCATACCATCGTCCATCTTCAACATTTCAACTCTCGAAGAGATTCAGTTCATTTACAATAATTTATCTGGCAGTCTACCACCTGATATGTGCAATGGACTTCCAATACTTCAATGGCTTGACCTTTCTGGGAATGCATTTTCTGGTAAAATTCCAACAAGTTTGCATCAGTGTAAGGAGCTCAAATATCTAAATATGAACAACAACAGACTTAATGGATTCTTACCCAGTGAAATTGGGAGATTATCTATGCTTCAGGTGTTGGACTTCAGTAACAACAACCTAACAGGTCCGCTTCCACCATCACTTTACAACATCTCCTCTTTGAGATTAATTAATCTTCGGAACAACAACTTTGGGGGAGTACTTCCGGGAGAAATGTGTGATCAGGTTCAGTCTCTTCAACAGATTTCTGTGTCAAATAATAAAATTGGGGGAAGCATTCCAAAGTCAATTTGCAACTGCACTGCACTGAGACGCTTATATTTAGGTGGGAACTCCATTACAGGCACCATACCACATGAGATAGGCGATTACTTACAAAACCTTGACACGTTGCATTTGCAAAATAACAAACTGATAGGATCTATTCCTCCAAACATCTTCAACATCTCAGGGTTAGAGAGTTTGTCACTATGTTATAACCAACTCTCAGGCACTCTTCCAATTTATGCATATCATAAACTCTCCAACCTCCAATACCTTTACCTCTCAGGAAATACTAATATAAGTGGAGAAATCCCAAGGAGCCTTTTTAATGCTACAAAGCTTATTAAACTGGTCCTTGCCAACAGTTCAATTACAGGAATTATACCTGACTCAATAGGGGAATTAAGAAACCTCAAGATTCTTTATCTGACGGGAAACTTATTGATTAGTGATCCTTCTTCTCCAGAAATTGACTTCCTTACTTCACTATCAAACTGTAGACAATTGGAAAGGTTTTCCATATCAACGAACCCTCTTGGTGGAAGACTCCCAAACTCGGTTGGAAACCTCTCAAGCTCTCTTCAAACTTTTGATGCTTGGGGTTGTAAAATCAAGGGTAAAATCCCTTCACAGATTGGCAAGTTAAGGAGTTTGTTTGATTTAAGACTGAACCAGAATGAACTCATTGGACAGGTTCCTAGCACAGTTGATGGTTTAGTGCATCTCCAACGTCTGGATCTAAGAGACAACAAACTAAATGGCTCAATTCCGGCTCAGATTTGTCAGTTAAAATATTTGGATCAGATTCTCCTCAGCAGAAATATGGTTTCTGCGGCAATTCCAGATTGTTTGGGGAGTCTTACTTCCCTAAGGAAGCTTTACTTAGACTCCAATGATTTGAACTCTACAATACCCTCTTCCCTTTGGAGCCTCACTAATATTTTGGAGGTAAACTTATCTTCAAATGGTTTAAGTGGGTTTTTGCCAGCTGAGATTGGTGACATAAACGTTGTGATAAAACTAGACCTATCAAAAAACATGCTTTCAGGAAATGTTCCTATAGGAATTGGTGGCTTGCAGAATATGTTGAGCCTCTCATTAGCTGATAATATGTTAGAAGGACCTATTCCTGATTCAATTGGCAATATGATAAGCTTGGAATTTCTGGATTTATCCCACAATTCTCTATCTGGCAACATTCCAAAGTCATTAGAGAAGCTTGTTTATCTCAATTTCATCAATGTTTCTTACAATAGACTGCAAGGAGAAATTCCTAGAGGTGGACCTTTTAGAAATTTCACAGCTCAATCATTCATGATGAATGATGCACTCTGTGGGAGACCTGAACTACGAGTCCAACCATGTCATCCAATTGATGCCAAGCAGAATAGGAAAACAGAAAACCTTATATTCAGATTGATAATTCCCTTGCTTGTGTCAAGCTTTTTCATTTTTTGTGCAGTTGTTCTCATATACAGGAGAATCTACCGCAAAGGTTCAAGTCATACTAACTATATAGACTTCCCATTATTGCAATTCCCAATTCGGATTTCATACTATGAACTTGTGGAGGCAACAGAGAATTTTGACGAGAGCAATCTCCTTGGAAGAGGGGGTTTTGGTTCTGTGTTCAGAGGTAGGCTTTCAAATGGAATGATGATTGCAATTAAAGTATTCAATTTGGATTCACAAGAAGCCTCGAGGAGTTTTGAGGTAGAATGTGAAGCACTGTGCAACCTTCGTCATCGAAATCTCGTTAAAGTTATAAGTAGTTGTTCAAATGCTGTTGATTTTAAAGCCTTGATGATGGAATTTGTGCCAAACGAGAGTCTGGAGAAGTGGTTGTATAGTTCTCATAACACTCATTTAAATTTCTTACAAAGGTTGAATATAATTATAGACGTTGCATCTGCATTGGAGTATCTCCATTATGGCAATTCAAAGCCTGTGGTACACTGTGACTTGAAGCCAAGCAATGTTCTGCTGGATGAAAATATGGTAGCTCATGTTTGTGATTTTGGAATTGCTAAAATATTGGAAGAAGGACAGTCTAGAACTCACACAAACACCTTGGCTACCCTTGGATATATTGCTCCAGAATATGGATCCAAAGGTACTGTATCGATAAAAGGAGATGTGTACAGCTATGGAGTTATGGTGATGGAAGTTTTTACAAGGAAGAAGCCAATTGATGAAATGTTTGTAGAGGGACTAACCTTGAAGTCATGGGTCCAGGGGTCAATGCCATACGAGATGATTCAGGTTTTGGATCCTTATTTGTTGGAGGGAGATGATCAGAAGCACCTTATTTCTTCTCAGGAAGTCCCTTTATCATCTATCATGGAATTGGCTTTGAATTGTTGTGCAGATTCCCCTGATGAAAGAATGATACCGGAGGCGTTGTCGGCCCGGTCTGTACGCCGGCCGATGAACCCGGCTAAGCTTGGGTCTGAGGGTGAGGAGGAGTAG 3582 0.3992 MAADKAALLAFKSCITSDPNNVLATNWSTSSSVCNWVGVTCDDPFHERVTALNLSGMSLNGTITPHLGNLTSLLHLDLHDNNFHGDLPQELALLRRLKLINFCNNKFNGKFPTWTGEFSELQTLSLCGNSFAGPIPSSLSRLSKLETLNLSSTFIEGNIPPELGRIRNLKVLDLAHARLSFNIPSSIFNISTLQVLHLGYNSLKGNIPREIDLPQLRRINLSKNNLSGAIPSSIFNISTLEEIQFIYNNLSGSLPPDMCNGLPILQWLDLSGNAFSGKIPTSLHQCKELKYLNMNNNRLNGFLPSEIGRLSMLQVLDFSNNNLTGPLPPSLYNISSLRLINLRNNNFGGVLPGEMCDQVQSLQQISVSNNKIGGSIPKSICNCTALRRLYLGGNSITGTIPHEIGDYLQNLDTLHLQNNKLIGSIPPNIFNISGLESLSLCYNQLSGTLPIYAYHKLSNLQYLYLSGNTNISGEIPRSLFNATKLIKLVLANSSITGIIPDSIGELRNLKILYLTGNLLISDPSSPEIDFLTSLSNCRQLERFSISTNPLGGRLPNSVGNLSSSLQTFDAWGCKIKGKIPSQIGKLRSLFDLRLNQNELIGQVPSTVDGLVHLQRLDLRDNKLNGSIPAQICQLKYLDQILLSRNMVSAAIPDCLGSLTSLRKLYLDSNDLNSTIPSSLWSLTNILEVNLSSNGLSGFLPAEIGDINVVIKLDLSKNMLSGNVPIGIGGLQNMLSLSLADNMLEGPIPDSIGNMISLEFLDLSHNSLSGNIPKSLEKLVYLNFINVSYNRLQGEIPRGGPFRNFTAQSFMMNDALCGRPELRVQPCHPIDAKQNRKTENLIFRLIIPLLVSSFFIFCAVVLIYRRIYRKGSSHTNYIDFPLLQFPIRISYYELVEATENFDESNLLGRGGFGSVFRGRLSNGMMIAIKVFNLDSQEASRSFEVECEALCNLRHRNLVKVISSCSNAVDFKALMMEFVPNESLEKWLYSSHNTHLNFLQRLNIIIDVASALEYLHYGNSKPVVHCDLKPSNVLLDENMVAHVCDFGIAKILEEGQSRTHTNTLATLGYIAPEYGSKGTVSIKGDVYSYGVMVMEVFTRKKPIDEMFVEGLTLKSWVQGSMPYEMIQVLDPYLLEGDDQKHLISSQEVPLSSIMELALNCCADSPDERMIPEALSARSVRRPMNPAKLGSEGEEE 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0088 1193 Gene3D Ribonuclease Inhibitor 1 152 IPR032675 -
Dere10g0088 1193 SMART serkin_6 900 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0088 1193 Gene3D Ribonuclease Inhibitor 527 834 IPR032675 -
Dere10g0088 1193 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 115 207 - -
Dere10g0088 1193 ProSiteProfiles Leucine-rich repeat profile. 756 779 IPR001611 GO:0005515
Dere10g0088 1193 Pfam Protein kinase domain 901 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0088 1193 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 533 829 - -
Dere10g0088 1193 Gene3D Phosphorylase Kinase; domain 1 883 976 - -
Dere10g0088 1193 Gene3D Ribonuclease Inhibitor 357 526 IPR032675 -
Dere10g0088 1193 MobiDBLite consensus disorder prediction 1173 1193 - -
Dere10g0088 1193 Gene3D Transferase(Phosphotransferase) domain 1 977 1181 - -
Dere10g0088 1193 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 977 1178 - -
Dere10g0088 1193 Pfam Leucine rich repeat N-terminal domain 3 42 IPR013210 -
Dere10g0088 1193 SUPERFAMILY RNI-like 218 595 - -
Dere10g0088 1193 ProSiteProfiles Protein kinase domain profile. 900 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0088 1193 Gene3D Ribonuclease Inhibitor 259 356 IPR032675 -
Dere10g0088 1193 Pfam Leucine Rich Repeat 756 778 IPR001611 GO:0005515
Dere10g0088 1193 SUPERFAMILY L domain-like 564 820 - -
Dere10g0088 1193 SUPERFAMILY L domain-like 4 259 - -
Dere10g0088 1193 PANTHER OS04G0122200 PROTEIN 299 403 - -
Dere10g0088 1193 Gene3D Ribonuclease Inhibitor 153 258 IPR032675 -
Dere10g0088 1193 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 3 114 - -
Dere10g0088 1193 SUPERFAMILY Protein kinase-like (PK-like) 874 1167 IPR011009 -
Dere10g0088 1193 SMART LRR_sd22_2 610 639 - -
Dere10g0088 1193 SMART LRR_sd22_2 310 336 - -
Dere10g0088 1193 SMART LRR_sd22_2 506 530 - -
Dere10g0088 1193 SMART LRR_sd22_2 408 434 - -
Dere10g0088 1193 SMART LRR_sd22_2 457 473 - -
Dere10g0088 1193 SMART LRR_sd22_2 359 385 - -
Dere10g0088 1193 SMART LRR_sd22_2 754 783 - -
Dere10g0088 1193 ProSitePatterns Protein kinases ATP-binding region signature. 906 928 IPR017441 GO:0005524
Dere10g0088 1193 FunFam Piriformospora indica-insensitive protein 2 255 353 - -
Dere10g0088 1193 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 354 449 - -
Dere10g0088 1193 FunFam Serine-threonine protein kinase plant-type 882 976 - -
Dere10g0088 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1021 1033 IPR008271 GO:0004672|GO:0006468
Dere10g0088 1193 Pfam Leucine rich repeat 214 274 IPR001611 GO:0005515
Dere10g0088 1193 Pfam Leucine rich repeat 410 468 IPR001611 GO:0005515
Dere10g0088 1193 Pfam Leucine rich repeat 336 396 IPR001611 GO:0005515
Dere10g0088 1193 SMART LRR_typ_2 359 383 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 658 682 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 166 190 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 70 94 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 457 482 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 213 237 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 310 334 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 610 634 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 754 778 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 408 432 IPR003591 -
Dere10g0088 1193 SMART LRR_typ_2 262 286 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0088 Dere-ChrDere10 1102072 1109908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0088 7 1166 Receptor kinase-like Gene Family AT5G46330 33.080 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere10g0088 Pkinase 1e-41 CL0016