Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0083 ATGTTGGGTGGGCTATATGGAGACCTCCCTCCTCCTTCTTCTGCCGAAGAAGAGAAACCCAGCAATACCAATGTGTGGTCGAGCAGCACCAAGATGGCCCCAGCAACCTTGCGCAAGCCGGCATCGGTTTTTGCACCTCCACAGACGGTTCTGAGAAACCAGAACAAGCCAAAAACGGTCAATTCTTCAGCACCCAAAACAGCGCCATCAACGCCGGTTTCAGCACCATCCCCGGTGGTGCCTGACGATGCGGCGCAACCCGCTCTTGTGGGTGTCCAGTCGACAGTGATAGAGGAGTATGACCCCGCGAGGCCGAATGACTATGAGGAATATCGGAGGGAGAAGAAAAGGAAGGCTAGGGAGGCAGAGATGATGAAAGAGCTTGAAAGGAGACGGCAGGAAGAGGAAGAGAGGGAGAGGAGAGAGAAAGAGGAGCGAGAGAAAGAAAGGGAAAGAGAATATGGGGATTCGAGATTGAATATATCTGGGGAGGAGGCATGGAGAAGGCGTGCGGCGATGAGTGGAGCAGTGCCGAGGTCTCCATCGCCGCCCAACAACGGAGACGGTTTTAGCATTGGCAAGTCGGAAACAGGTGGGTTGGGGCTTGGTGCAGGTGGGCAAATGACAGCAGCTCAAAGAATGATGGCAAAGATGGGATGGAAGGAGGGGCAAGGGCTTGGAAAGCAGGAGCAAGGAATTACCACTCCGTTGATGGCCAAGAAAACAGATAGACGAGCTGGAGTTATTGTGAATGCTAGTGACAATAAGCCGGAAAAGAAAGTAAAGAGTGTGAACTTCAACGGGCCTCCTACTCGGGTGCTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAACTTGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGGACGGTAACTCGGGTTCTGATATTTGAGATAACAGAGCCAAATTTCCCTCCTGATGAAGCCGTTAGAATCTTTGTGCAATTTGAGAGGTCTGAAGAAACAACTAAAGCCATTATTGACCTCGATGGTAGGTTCTTTGGAGGTAGAGTGGTGCGAGCCTCATTTTATGATGAAGAGAGGTTTGGTAAGAATGAGTTGGCTCCAATGCCAGGAGAAATCCCTGGCTTTTTCTGA 1134 0.5088 MLGGLYGDLPPPSSAEEEKPSNTNVWSSSTKMAPATLRKPASVFAPPQTVLRNQNKPKTVNSSAPKTAPSTPVSAPSPVVPDDAAQPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKELERRRQEEEERERREKEEREKEREREYGDSRLNISGEEAWRRRAAMSGAVPRSPSPPNNGDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNKPEKKVKSVNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPPDEAVRIFVQFERSEETTKAIIDLDGRFFGGRVVRASFYDEERFGKNELAPMPGEIPGFF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0083 377 Gene3D - 271 357 IPR012677 -
Dere10g0083 377 PIRSF SPF45 3 373 IPR040052 GO:0045292
Dere10g0083 377 SMART G-patch_5 205 251 IPR000467 GO:0003676
Dere10g0083 377 MobiDBLite consensus disorder prediction 1 199 - -
Dere10g0083 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 358 IPR000504 GO:0003723
Dere10g0083 377 SMART rrm2_1 273 354 IPR003954 GO:0003676
Dere10g0083 377 MobiDBLite consensus disorder prediction 102 165 - -
Dere10g0083 377 SUPERFAMILY RNA-binding domain, RBD 275 360 IPR035979 GO:0003676
Dere10g0083 377 Pfam G-patch domain 210 249 IPR000467 GO:0003676
Dere10g0083 377 PANTHER SPLICING FACTOR 45 SPF45 1 368 IPR040052 GO:0045292
Dere10g0083 377 FunFam Putative splicing factor 45 271 357 - -
Dere10g0083 377 MobiDBLite consensus disorder prediction 47 70 - -
Dere10g0083 377 MobiDBLite consensus disorder prediction 16 35 - -
Dere10g0083 377 CDD RRM_UHM_SPF45 270 366 IPR034653 -
Dere10g0083 377 ProSiteProfiles G-patch domain profile. 207 253 IPR000467 GO:0003676
Dere10g0083 377 Coils Coil 108 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0083 213 248 C2H2 Transcription Factor Family AT5G26610 61.111 6.10e-07 48.9