Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0080 ATGCCCTCCTCTCTGCAATATTCTTGCTTGCTGTTTTCCATGTTTTTGCATCACACGTGGGCTCTATCATCTATGGCACTTTCTATGCACAAAGATTCATCCAACAAGCAGATGGACTCGAGCAAGTATGTGAGGTATACACCTGAGCAGGTGGAGGCTTTGGAGAGGGTGTATGCAGAATGCCCGAAGCCTAGTTCTTCGAGGAGACAGCAGCTCATTAGGGAGTGTCCTATACTTGCCAATATTGAACCCAAACAGATCAAAGTCTGGTTTCAGAACCGCAGATGTCGTGAAAAGCAGAGGAAGGAATCATCGCGACTGCAGACGGTAAATAGGAAGCTCACTGCCATGAACAAGTTGTTAATGGAAGAGAATGATCGATTGCAGAAGCAGGTCTCACATTTGGTTTATGAAAATGGATACATGAGACAACAGATACATACTGCATCTGCTACTACTACAGACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCACCAACAGCAAAACCCAACACCTCAGCATCCCCAGAGGGATGCCAATAACCCAGCTGGTCTTCTCGCAATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTAGCTGTTTCCCGCAACTGTAGTGGAATAGCAGCACGAGCTTGTGGCCTCGTGAGTCTAGAGCCCACGAAGGTTGCCGAGATTCTTAAAGATCGTCCATCATGGTATCATGACTGCCGCTGCCTTGATGTGTTGAGCATAGTCCCTGCTGGGAACGGGGGGACAATAGAGCTCATGTACATGCAGACTTATGCACCTACGACATTGGCTGCAGCACGTGACTTCTGGACTCTCAGATACACTACAAATTTAGAAGATGGAAGTCTTGTGATATGTGAGAGGTCATTGACATCTTCAACTGGTGGTCCCACAGGACCTCCTGCGTCAAACTTTGTTAGAGCTGAAATGCTTCCTAGTGGTTATCTAATTAGACCTTGTGAGGGTGGCGGATCTATTATTCACATTGTTGATCATGTGGACTTAGATGTTTGGAGTGTTCCTGAAGTGCTCAGGCCCCTCTATGAATCATCAAAAATCCTAGCTCAGAAGACGACTATTGCTGCCTTGCGACATATAAGGCAAATTGCACAAGAAACAAGTGGAGAAATTCAATATGGTGGGGGCCGCCAGCCTGCTGTTTTAAGGACATTTAGTCAGAGACTTAGCAGGGGGTTCAATGATGCTGTGAATGGGTTTGTGGATGACGGCTGGTCACTGATGGGTAGTGATGGTGCTGAAGATGTGACCATAGCCATTAACTCATCTCCCAACAAATTTTTTGGGTCCCATTACAGTACCTCAATGTTCCCAGCGTTTGGAGGTGGGGTGCTGTGTGCCAAGGCATCAATGTTGCTACAGAATGTTCCTCCTGCTTTGCTTGTTCGCTTTCTGAGGGAGCATCGCTCAGAGTGGGCTGATTATGGGGTTGATGCATACTCTGCTGCATGTCTCAAGGCTAGTCCTTATGCAATTCCTTGTGCAAGGCCTGGTGGCTTCCCCAGCAGCCAGGTCATTTTGCCACTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATAGAGGGTCATGCATTTTCCCCTGAAGATGTGGCACTGGCGCGGGATATGTATCTACTGCAGCTGTGCAATGGAATTGATGAAAATGCAATTGGATCATGTGCTCAGCTTGTGTTTGCACCTATTGATGAATCATTTGCGGATGATGCTGTCTTGCTTCCTTCTGGTTTCCGTGTCATACCATTGGATTCTAAAACAAATGGTTCAGCAGCAACCAAGACATTGGATCTGGCATCTACACTTGAAGCTGGATCAGGCAATGCCCGTTCAGCTGGTGAATCTGATCCAAACAGTTACAACCTCAGGTCGGTCCTTACTATAGCATTTCAATTTATGTTTGAGAACCATATGCGGGACAATGTGGCTGCCATGGCTCGCCAGTATGTGCGCAGCATTGTGGGGTCCGTTCAGAGGGTTGCCATGGCAATTTCTCCCTCTCGCCTCAGTACCCAGCTGGGTCCTAAGTCTCTCCCCGGTTCTCCAGAGGCTCTTACATTAGCGCGATGGATCTGTAGAAGCTACAGGATCCACACTGGGGCAGAGATATTTCAGGTTGAGTCCGCAGCAACCGATGCAATCTTGAAGCAACTTTGGCATCATTCGGATGCTATCATGTGCTGTTCCGTGAAAACAAATGCATCTCCAATTTTCACCTTTGCAAACCAGGCTGGACTAGACATGCTTGAGACTACTCTTGTAGCCCTTCAAGATATAATGCTTGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTCTGCTCTGAGTTCTCCAAAATAATGCAGCAGGGATTTGCTTATCTGCCAACAGGAGTATGTGTATCCAGCATGAATAGGCCTGTGTCCTATGAGCAGGCCATTGCATGGAAAGTTCTGAATGATGATGATTCCAATCACTGCCTTGCCTTCATGTTCATGAACTGGTCTTTTGTCTAA 2610 0.472 MPSSLQYSCLLFSMFLHHTWALSSMALSMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSSRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMRQQIHTASATTTDNSCESVVMSGQHQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPTKVAEILKDRPSWYHDCRCLDVLSIVPAGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTNLEDGSLVICERSLTSSTGGPTGPPASNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKTTIAALRHIRQIAQETSGEIQYGGGRQPAVLRTFSQRLSRGFNDAVNGFVDDGWSLMGSDGAEDVTIAINSSPNKFFGSHYSTSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASPYAIPCARPGGFPSSQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVALARDMYLLQLCNGIDENAIGSCAQLVFAPIDESFADDAVLLPSGFRVIPLDSKTNGSAATKTLDLASTLEAGSGNARSAGESDPNSYNLRSVLTIAFQFMFENHMRDNVAAMARQYVRSIVGSVQRVAMAISPSRLSTQLGPKSLPGSPEALTLARWICRSYRIHTGAEIFQVESAATDAILKQLWHHSDAIMCCSVKTNASPIFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKILCSEFSKIMQQGFAYLPTGVCVSSMNRPVSYEQAIAWKVLNDDDSNHCLAFMFMNWSFV 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0080 869 MobiDBLite consensus disorder prediction 152 182 - -
Dere10g0080 869 SUPERFAMILY Bet v1-like 190 401 - -
Dere10g0080 869 SMART HOX_1 39 105 IPR001356 GO:0003677
Dere10g0080 869 Gene3D - 210 403 IPR023393 -
Dere10g0080 869 MobiDBLite consensus disorder prediction 152 180 - -
Dere10g0080 869 SUPERFAMILY Bet v1-like 437 624 - -
Dere10g0080 869 SUPERFAMILY Homeodomain-like 41 103 IPR009057 -
Dere10g0080 869 CDD homeodomain 42 102 IPR001356 GO:0003677
Dere10g0080 869 FunFam Homeobox-leucine zipper protein REVOLUTA 42 97 - -
Dere10g0080 869 CDD bZIP 94 133 - -
Dere10g0080 869 Pfam MEKHLA domain 724 868 IPR013978 -
Dere10g0080 869 Coils Coil 111 131 - -
Dere10g0080 869 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 38 869 IPR044830 GO:0003700
Dere10g0080 869 CDD START_ArGLABRA2_like 184 400 - -
Dere10g0080 869 ProSiteProfiles 'Homeobox' domain profile. 37 101 IPR001356 GO:0003677
Dere10g0080 869 Gene3D - 33 108 - -
Dere10g0080 869 FunFam homeobox-leucine zipper protein ATHB-15 225 406 - -
Dere10g0080 869 ProSiteProfiles START domain profile. 180 381 IPR002913 GO:0008289
Dere10g0080 869 Pfam Homeodomain 42 100 IPR001356 GO:0003677
Dere10g0080 869 SMART START_1 189 399 IPR002913 GO:0008289
Dere10g0080 869 Pfam START domain 190 397 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0080 Dere-ChrDere10 998229 1004846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0080 29 869 Homeobox Transcription Factor Family AT2G34710 79.763 0.0 1412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere10g0080 START 8.2e-53 CL0209