LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0076	ATGACTTCTTCTGATCATGATCTCACTGATAATGAAGCTAATGAGCAGCAAACGGAGTCAGATTCACAGATGTTGACTTCATCTGCAAAAGGAATTTCTGATTCAGGTATTGCTACCCCGAATGTTCAGTATGCATCACCTCCGCAGCTTGGAACTGGACATGCTATGGCACCGTCAGTTTACCCATACCCAGATCCTTACTATAGGAGCATCTTTGCTCCCTATGAGACGCAACCTTATCCCCCACAACCCTATGGTGCCCAGCCGATGGTCCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTACCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTGAGACGCAGGCAATCTCGTGCTAAAGCTGAATCAGTAAATAAAGTTATCAAGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCATTGAGAAGAGCACGGGGATGCGGAGGTCGGTTTCTTAATTCAAAGAAAAGTGAGAACCAACAGAATGAGGCGGCATCAACTGACAAATCACAGTCTAATATCAATCTCAATCCTGACAGAAAGGATCTTGCTTCATCAGATAGTATTTCCTAA	621	0.4364	MTSSDHDLTDNEANEQQTESDSQMLTSSAKGISDSGIATPNVQYASPPQLGTGHAMAPSVYPYPDPYYRSIFAPYETQPYPPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESVNKVIKNRKPYLHESRHLHALRRARGCGGRFLNSKKSENQQNEAASTDKSQSNINLNPDRKDLASSDSIS	206

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0076	206	Gene3D	-	110	171	-	-
	Dere10g0076	206	MobiDBLite	consensus disorder prediction	165	206	-	-
	Dere10g0076	206	MobiDBLite	consensus disorder prediction	1	50	-	-
	Dere10g0076	206	MobiDBLite	consensus disorder prediction	15	48	-	-
	Dere10g0076	206	ProSitePatterns	NF-YA/HAP2 subunit signature.	115	135	IPR018362	GO:0003677\|GO:0016602
	Dere10g0076	206	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	112	167	IPR001289	GO:0003700\|GO:0006355
	Dere10g0076	206	PRINTS	CCAAT-binding transcription factor subunit B signature	144	167	IPR001289	GO:0003700\|GO:0006355
	Dere10g0076	206	PRINTS	CCAAT-binding transcription factor subunit B signature	113	135	IPR001289	GO:0003700\|GO:0006355
	Dere10g0076	206	ProSiteProfiles	NF-YA/HAP2 family profile.	110	170	IPR001289	GO:0003700\|GO:0006355
	Dere10g0076	206	MobiDBLite	consensus disorder prediction	169	206	-	-
	Dere10g0076	206	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	12	194	IPR001289	GO:0003700\|GO:0006355
	Dere10g0076	206	SMART	cbf3	109	170	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0076	Dere-ChrDere10	902959	908159	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0076	1	206	CCAAT-HAP2 Transcription Factor Family	AT1G30500	57.488	2.13e-73	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Dere10g0076		CBFB_NFYA	4.2e-26	No_clan