Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0072 ATGAGTAATCATCGGGAAATTGGGAAGGCTGCCTCGGGTAAAAGAAGATTGAGAGATCTATTGCTTCAAAAAGATAATCGTTTTTGTGCTGATTGTAATGCTCCAGATCCGAAATGGGCGTCAGCTAATGTTGGTGTTTTTATATGCTTAAAATGTTGTGGCGTGCACAGAAGCCTTGGTTCACATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAATAGGTGCCATGATTGAAGTCGGAGGAAATGCTTCTGCTAATAAAATTTATGAGGCATTTATTCCAGAAGGATATACAAAGCCCACACCAGATGCCAGTCATGAGCTGCGTTCAAGTTTCATCCGGTCCAAGTATGAGCTTCAAGACTTTTTGAAACCTGGTCTGCGCATTGCATCCGGAAAAGGCTCTCTGGAGTCAAATTCTTCCAACAAAACTAGGGATAGTTTTCAAAGCACCAGTTCACAGAAAACGCAAGGCATGGTAGAATTTATTGGGTTGCTGAAGGCGAAAGTGGTTAAAGGCACAAATTTAGCTATTCGAGATATGATGTCAAGTGATCCGTATGTCATCCTGAGTATTGGCCGGCAGACTGCTCAGACAACTGTAATGAACAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTATTCCCCAGGAATACGGAACATTGAAATTGCAAGTATATGATCATGACACGTTTTCGGCCGATGATATAATGGGAGAAGCAGAAATTGATCTCCAGCCCCTGATAACATCAGCAATGGCGTTTGGAAATGCTGGAATGTTCAGCGATATGCAGATAGGAAAATGGCTTAAATCTGATGACAATGCTCTCATAGAGGATAGCTTAGTCAATATAGTTGATGGGAAGATTATACAGAAGATGACTCTCAAGCTCCAGAACGTTGAATGTGGAGAAATAGATCTAGAACTTGAGTGGATGCCTCTCGATCAATAG 981 0.4139 MSNHREIGKAASGKRRLRDLLLQKDNRFCADCNAPDPKWASANVGVFICLKCCGVHRSLGSHISKVLSVTLDEWSDDEIGAMIEVGGNASANKIYEAFIPEGYTKPTPDASHELRSSFIRSKYELQDFLKPGLRIASGKGSLESNSSNKTRDSFQSTSSQKTQGMVEFIGLLKAKVVKGTNLAIRDMMSSDPYVILSIGRQTAQTTVMNSNLNPVWNEELMLSIPQEYGTLKLQVYDHDTFSADDIMGEAEIDLQPLITSAMAFGNAGMFSDMQIGKWLKSDDNALIEDSLVNIVDGKIIQKMTLKLQNVECGEIDLELEWMPLDQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0072 326 Pfam Putative GTPase activating protein for Arf 15 130 IPR001164 GO:0005096
Dere10g0072 326 SMART C2_3c 171 266 IPR000008 -
Dere10g0072 326 SMART arf_gap_3 14 136 IPR001164 GO:0005096
Dere10g0072 326 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 166 323 IPR035892 -
Dere10g0072 326 FunFam Arf-GAP with dual PH domain-containing protein 1 9 137 - -
Dere10g0072 326 CDD ArfGap 17 123 - -
Dere10g0072 326 CDD C2_ArfGAP 169 313 - -
Dere10g0072 326 MobiDBLite consensus disorder prediction 139 159 - -
Dere10g0072 326 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 168 326 - -
Dere10g0072 326 ProSiteProfiles C2 domain profile. 149 267 IPR000008 -
Dere10g0072 326 Pfam C2 domain 171 260 IPR000008 -
Dere10g0072 326 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Dere10g0072 326 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 128 IPR001164 GO:0005096
Dere10g0072 326 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 7 326 IPR044518 GO:0005096|GO:0005543
Dere10g0072 326 Gene3D C2 domain 168 326 IPR035892 -
Dere10g0072 326 SUPERFAMILY ArfGap/RecO-like zinc finger 14 130 IPR037278 -
Dere10g0072 326 PRINTS HIV Rev interacting protein signature 45 62 IPR001164 GO:0005096
Dere10g0072 326 PRINTS HIV Rev interacting protein signature 26 45 IPR001164 GO:0005096
Dere10g0072 326 PRINTS HIV Rev interacting protein signature 66 87 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0072 Dere-ChrDere10 864983 870529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0072 7 326 C2H2 Transcription Factor Family AT4G21160 72.727 0.0 506