Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0023 ATGGCGAAATTCTCGGTTGGTGGGGACGACGATGGGGAAGGACCCAGCAACCCAACCCAAAAGCGACGCAGGATCGCTGTTAACTGTAGCACCAGCGGAAAAGGCGAACGAGAAGACATCGGAAACCCAATTGGAACAGAGGACGAAAGAGATGATCTTGTGCAGGAACTAGAAGTGGTACAAAGTGAAGATCCATTTAGCGATGATTCTGGTGAATTTAATTGCTTCAGAACCAGATCGAACGATAGCGATGGAGTCATCAACGTTTCTTTAACTAAAAATAAGGATAGGTCCATTTCTGTTACCCTTACCGACCCTGATGTCCTTGATTGCTGCATCTGCTACGAGCCCTTGAGTATCCCTATCTTCCAGTGCGAGAATGGGCATATTGCTTGCTCCTCCTGTTGTGTCAAACTTGGGAATAAGTGTCCCATGTGCTCTATGCCCATTGGCTATAACCGTTGCCGAGCCGTTGAGAAGGTGTTGGAATCTGTCAAGATATCCTGCCTAAATGCAAAATATGGTTGTAAAAAGACAATTAGTTACAGTAAGAAGAATGACCATGAGAAGGAATGCATTTATGCACCCTGTATATGCCCGCAATCTGGTTGCAACTTCGTTGGCTCATCCAAGGAGCTGTCCCTCCACTTCAGCTGTAAACATGAGGGTTCTGCAAGACATTTTACCTATGATCGCTTCTTCTCCGTCTTCCTGAAGGTGAACGACGAAGTTATTGTTCTTCAAGAACAGAATGATGCTGATTTATTCATGCTCAACAATAATGTGGGGGATCTGGGGAATATAGTCAATGTTAGTTGCGTTGGCCCCAATTCATTGATGCATCATTATGATATTTTGGCTAGATCTCAGGGATGCTGTCTAAAAATACAATCTTTTGCGGAGAACAGTCAAGGTCGCAAAGCCAATAATACTACTTCAACAGGGTTTCTTTTGATCCCATATGGATTTTTTGGTTCTTCTGGACAGCTCAAACTGGACATTCGCATCAAGTGTAATGTAACTCATCTTTCAGATGTCCAAAGATCGTAG 1050 0.4381 MAKFSVGGDDDGEGPSNPTQKRRRIAVNCSTSGKGEREDIGNPIGTEDERDDLVQELEVVQSEDPFSDDSGEFNCFRTRSNDSDGVINVSLTKNKDRSISVTLTDPDVLDCCICYEPLSIPIFQCENGHIACSSCCVKLGNKCPMCSMPIGYNRCRAVEKVLESVKISCLNAKYGCKKTISYSKKNDHEKECIYAPCICPQSGCNFVGSSKELSLHFSCKHEGSARHFTYDRFFSVFLKVNDEVIVLQEQNDADLFMLNNNVGDLGNIVNVSCVGPNSLMHHYDILARSQGCCLKIQSFAENSQGRKANNTTSTGFLLIPYGFFGSSGQLKLDIRIKCNVTHLSDVQRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0023 349 CDD RING-HC_SIAHs 109 147 - -
Dere10g0023 349 Pfam Seven in absentia protein family 154 222 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dere10g0023 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 78 337 IPR044286 -
Dere10g0023 349 MobiDBLite consensus disorder prediction 1 49 - -
Dere10g0023 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 217 IPR013083 -
Dere10g0023 349 ProSiteProfiles Zinc finger RING-type profile. 111 147 IPR001841 -
Dere10g0023 349 SUPERFAMILY TRAF domain-like 164 336 - -
Dere10g0023 349 ProSiteProfiles Zinc finger SIAH-type profile. 164 222 IPR013010 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0023 107 222 C3H Transcription Factor Family AT2G41980 36.441 3.85e-19 84.7