Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0018 ATGTGTAGCATCTTTGGGCCAATTATGGAGAATTATGAAGGTGACTTAACTGACATAGTGCGTGCTAGTACAGGCACTTCATCATCATCTGATCACTGGCAATTCTCTTCTTCTGATCCAATGATCAATTTCTCTAGTGTTATGGAAGAGCCAATTGTACGAGGCAGCTTTGGTGATCCATTCTCCAACATGCGAGATCCCTTTCTACATCATCATCATACACCTCAAGTTTCTGATTCTTACTTTGATACGACAAATAATTCTGCTGACATGTTGGTCACTACTGCTGCTTCTCGGAGTATGCAAGAAGCAGCTGGATTTGGTGTAGGTAGTACTGCTACTTCTTCTGTATGGGGACGCAAGATTGTCGAGGACGATATGAGAAGGCCTTGTGATAACATATTCTCAGACTTGATTCAGATCTCACCCAATGCAAAGTTGCCTGTCTCGCCATGTGAGTCCCCAGCCACCACTGCAATTAAACTCCCACCACACACCCCTAAAGATTGCGGCCTGCAGATCTCATCTTCACGGAATTTGGGTCTTAAGCGAAGGAAGAGCCTGGTGAAGAAGGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGATCAAGTGGAGAGGTGGTTCCTTCTGATTTGTGGGCTTGGAGAAAGTATGGACAGAAACCCATTAAAGGCTCTCCTTATCCAAGGGGTTATTACAGATGCAGCAGCTCAAAGGGTTGCTCGGCGAGAAAACAAGTGGAGAGGAGCAGGACGGACCCAAACATGTTAGTGATCACATATACCTCAGAGCACAACCATCCTTGGCCAACCCAAAGAAATGCTCTCGCTGGTTCTTCCCGCTCCCACACATCCAAAATCAATAGGAATTCAGAGTCTACTCATCATTCCCAAGAGGCCATGAAGCCAAAGGAATTAGACTTAGAGCAGAAAAAGAGCAATAATAATGATAATATTAATTTGTTTCCAGTTGGTGTTGGAAGCTCAGCAAGTGTGAAACAAGAGATGGAAGAAGACATGGCTGCAGAGAGGAAGCAGCTTGATAACGAGGTCATGGATGATGGAGATCAATTCTTTGCAGAGTTGGGTGAAATAGAAGCTCACTACCCTCTAAACCTGTTGTTCACTCAAGGTTTTAATGATGCATCAGCTGATCAGGATCATGAAGAGCACACAGAATCCAAGGTTTTAGATCCATTCCATGATCTCTTTGACTGGTCATCAGCAGACAACCCCACCTTATTTCAGCAACCTATGAGAGGGTTATAA 1275 0.4455 MCSIFGPIMENYEGDLTDIVRASTGTSSSSDHWQFSSSDPMINFSSVMEEPIVRGSFGDPFSNMRDPFLHHHHTPQVSDSYFDTTNNSADMLVTTAASRSMQEAAGFGVGSTATSSVWGRKIVEDDMRRPCDNIFSDLIQISPNAKLPVSPCESPATTAIKLPPHTPKDCGLQISSSRNLGLKRRKSLVKKVVCIPAPAAANSRSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSHTSKINRNSESTHHSQEAMKPKELDLEQKKSNNNDNINLFPVGVGSSASVKQEMEEDMAAERKQLDNEVMDDGDQFFAELGEIEAHYPLNLLFTQGFNDASADQDHEEHTESKVLDPFHDLFDWSSADNPTLFQQPMRGL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0018 424 MobiDBLite consensus disorder prediction 290 306 - -
Dere10g0018 424 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 14 376 IPR044810 GO:0003700
Dere10g0018 424 MobiDBLite consensus disorder prediction 265 289 - -
Dere10g0018 424 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0018 424 Coils Coil 335 355 - -
Dere10g0018 424 MobiDBLite consensus disorder prediction 265 306 - -
Dere10g0018 424 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0018 424 Gene3D WRKY domain 186 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere10g0018 424 SUPERFAMILY WRKY DNA-binding domain 209 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere10g0018 424 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere10g0018 424 FunFam probable WRKY transcription factor 14 185 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0018 Dere-ChrDere10 277558 280248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0018 1 413 WRKY Transcription Factor Family AT1G30650 39.783 8.93e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere10g0018 WRKY 2.3e-25 CL0274