LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere10g0017	ATGGAAGGAAAGGGGAATTGGTCATCGGCGCACCAAGCTCCCACCGTTTACAAACATCGCTTTGAACTGAGAGATTGTTTGATGGAACAGTACGAGAAAGTTGAGAAGATTGGTGAAGGAACCTATGGTGTGGTTTACAAGGCTCGTGACCGGGTCACAAATGAGACTATAGCTTTGAAGAAAATTCGACTGGAGCAGGAAGATGAGGGTGTGCCAAGCACTGCAATACGAGAGATTTCCCTCTTGAAAGAGATGCAGCATAGGAACATTGTTAGATTACAGGACGTCGTGCACAGCGAGAAACGTTTGTACCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCAAAAGATCTCCGACAAGTAAAAATGTTCCTGTACCAAATTCTCTGTGGCATTGCTTATTGTCATTCACATAGAGTTCTTCACCGAGACTTGAAACCACAAAATTTATTGATAGATCGCCGCACTAAAGCACTAAAGCTTGCAGATTTTGGATTGGCCAGGGCATTTGGTATTCCTGTCAGGACATTTACACATGAGGTGGTGACACTGTGGTACAGAGCTCCAGAAATATTGCTTGGATCTCACCATTATTCTACCCCTGTTGATGTTTGGTCAGTGGGCTGTATATTTGCTGAGATGGTAAACCAACGAGCACTATTCCCTGGGGACTCTGAGATTGATGAATTGTTTAGAATATTCAGAATCTTGGGTACGCCAAATGAAGATACATGGCCTGGAGTGACTTCATTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCCTCCTAGGGACCTATCAACTGTGGTTCCAAATCTTGAGCCAGCTGGTGTTGATCTTCTTTCTAGTATGCTTTGCTTGGATCCCAGCAAAAGGATTACCGCCAGGAGCGCTCTTGAGCACGAATACTTCAAAGACATTAAATTTGTACCCTGA	966	0.4369	MEGKGNWSSAHQAPTVYKHRFELRDCLMEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDLRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTKALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSHHYSTPVDVWSVGCIFAEMVNQRALFPGDSEIDELFRIFRILGTPNEDTWPGVTSLPDFKSAFPKWPPRDLSTVVPNLEPAGVDLLSSMLCLDPSKRITARSALEHEYFKDIKFVP	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere10g0017	321	SMART	serkin_6	31	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0017	321	CDD	STKc_CDK1_CdkB_like	31	314	-	-
	Dere10g0017	321	Gene3D	Transferase(Phosphotransferase) domain 1	113	319	-	-
	Dere10g0017	321	Pfam	Protein kinase domain	31	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0017	321	PANTHER	CELL DIVISION PROTEIN KINASE	29	314	-	-
	Dere10g0017	321	ProSiteProfiles	Protein kinase domain profile.	31	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere10g0017	321	ProSitePatterns	Protein kinases ATP-binding region signature.	37	60	IPR017441	GO:0005524
	Dere10g0017	321	FunFam	Cell division control protein 2 homolog	113	319	-	-
	Dere10g0017	321	Gene3D	Phosphorylase Kinase; domain 1	28	111	-	-
	Dere10g0017	321	FunFam	Cell division control protein 2	28	111	-	-
	Dere10g0017	321	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	150	162	IPR008271	GO:0004672\|GO:0006468
	Dere10g0017	321	SUPERFAMILY	Protein kinase-like (PK-like)	25	317	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere10g0017	Dere-ChrDere10	248639	254081	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere10g0017	28	321	Core Cell Cycle Gene Families	AT3G48750	85.714	0.0	534

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Dere10g0017		Pkinase	1.1e-79	CL0016