Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0015 ATGACTACAATTGAATTAATGCATATTTTTGGAGCCAAAGCTATGCAGAGCCAGCTTGTCTGTAGTGGATGTAGGAGTATTTTGCTTTACCCTAGAGGCGCAACCAATGTATGTTGTGCATTATGCAACGCAATCACCTCTGTTCCTCCACCTGGAATGGAGATGTCTCAACTTTATTGTGGAGGTTGTCGAACATTGCTAATGTACACACGTGGAGCTGCAAGTGTGAGATGTCCCTGCTGTCAAACTGTTAACCCTGCACCAGCCCATATCCACTGTGGGAACTGTCGGACTACACTCATGTTTCCATATGGTGCTCCATCAGTCAAATGTGCAGTTTGTCACTATATCACTGACGTCAGTATGAGCAACGGAAGGATTCCAGTTCCTGTCCACAGACCTAATGGAACAATCAACTCTGGAGCATTGCCTTCTACTTCAATGAGCCAAACTGTCCTGGTTGAAAATCCTATGTCTGTTGATGCAAGCGGAAAACTGGTGAGCAACGTTGTCGTTGGCATTACTACCGATAAGAAATAA 540 0.4463 MTTIELMHIFGAKAMQSQLVCSGCRSILLYPRGATNVCCALCNAITSVPPPGMEMSQLYCGGCRTLLMYTRGAASVRCPCCQTVNPAPAHIHCGNCRTTLMFPYGAPSVKCAVCHYITDVSMSNGRIPVPVHRPNGTINSGALPSTSMSQTVLVENPMSVDASGKLVSNVVVGITTDKK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0015 179 Pfam LSD1 zinc finger 21 45 IPR005735 -
Dere10g0015 179 Pfam LSD1 zinc finger 60 84 IPR005735 -
Dere10g0015 179 Pfam LSD1 zinc finger 93 117 IPR005735 -
Dere10g0015 179 NCBIfam zinc finger domain, LSD1 subclass 90 118 IPR005735 -
Dere10g0015 179 NCBIfam zinc finger domain, LSD1 subclass 18 48 IPR005735 -
Dere10g0015 179 NCBIfam zinc finger domain, LSD1 subclass 57 85 IPR005735 -
Dere10g0015 179 PANTHER PROTEIN LSD1 16 178 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0015 Dere-ChrDere10 231468 239883 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Dere10g0015 zf-LSD1 3.2e-11 No_clan