Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0014 ATGCCTACGCGTCTTTCACCTCAGAATCTGAGCCCCTCCTTGCTAATAAGGTTGCTTATAGAGGGAGTAGAAACTGTTTCTGGGTTGTTTTATCTATTAATTGGGGACTTTAATGAGACTCCATCCACAGCAGCTGCTACACTAAAGCAGGTGCTGTTGCTGCTTTGTAAAGGCTGCCTTGCAACGGAACTACCATGGTGTTTTCTTCAAAATTTTCCATGCCATGGTGGATGCCATTGGCAGCACTGCCTCAGCCTAGATTGGGTGAATAATGGCTTTAGTGTTAGTGACAAATGTTTAAAGTTGCAAAATAGTAGCATTGGGGTTAAGATTCTCTGTTCACTAACATCAATGTTATGGCATCTACTACTGGTGAATCAGTACAAGGAAGCAATATGCTTAGTGAGGCAACTATATACTTTGCAGGATTGTCCTTCTAGGAAAACTTTGAAAAATGACCACGCAGCTGAATCTTCCGGGAGTCCCCGAAATAAAAAGATATCAGCAAGATGGGATCCAAATGAAGCGTGCCAACCTACAATTGATGAAGCACCTGTGTTTTATCCTACTATTGAGGAATTTGAGGACACACTTGGTTACATAGGAAAGATACGTCCTCAAGCTGAACCTCATGGCATATGCAGGATTGTCCCTCCATCTTGCTGGGTTCCACCCTGCCCTCTTAAGGAGAAAAATATATGGGAAAATGCCAAATTTCCTACCCGCATTCAGCAAATTGACTTGCTCCAAAATAGGGAGCCCATGAGAAAGAAAACAAAGGGACGGAGACGAAAACGCAGAAAGCACTCAAAAATGGGAACATGTAGGAGACGCACCAATTCAGGTTTGGAAGCTAATGTTGCTTCTGAACCTGAAGAAAAATTTGGATTCCAATCAGGATCAGATTTCACACTTGCTGATTTTCAACGATATGCTGATTTCTTTAAGGAATGCTACTTTGGGATAAAGGATGCCAAAGAAGATCTAAATATTGGTGATGATAATGACCAGAAGAGGTGGGAGCCCTCTGTGGAGGACATTGAAGGTGAATATTGGCGAATAATCGAGCAACCAACAGATGAAGTTGAGGTTTATTATGGAGCAGACCTGGAAATTGGAGCACTTGGAAGTGGTTTTCCAAAGGCAACATCCTTAACTAATAGTTTGGATCAGTATGCCGTGTCAGGCTGGAATCTGAATAACTTTCCCCGACTACCTGGTTCTGTACTATGTTTTGAGGGAAGTGACATTTCGGGAGTTCTTGTGCCTTGGCTATATGTTGGAATGTGTTTCTCATCTTTTTGCTGGCATGTTGAGGATCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGATCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTTCAGCTTTGGAAGATGTAATGAGGAAGCATTTACCTGATCTATTTGAGGAACAGCCAAATCTACTCAATGAATTGGTTACACAACTTTCTCCTTCTATTCTTAAATCTGAGGGAGTGCCAGTATATCGTACTGTTCAACATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTTAACTGTGCAGAGGCGGTAAATGTGGCCCCTGTCGATTGGTTAGTGCATGGCCAGAATGCGGTTGAGCTTTATAGTAAGCAGTGTCGTAAGACATCGTTATCTCATGACAAGTTGTTATTAGGATCAGCTCAGAAAGCTGTACGAGCTCTTGCAGAGCTAGAAATTGGAAAGGAAACTTCAAAAAGTCTGAAATGGAAAAGTGTTTGTGGAAAAGAGGGAGTTCTTACTAAGGCTGTTGAGACAAGGATAAAGATGGAAGAAGAGAGGTTAGACTCTTTTCCAACTCATGTGAATTTGCTGAAGATGGATAGTGACTTTGATATGGATAAGGAAAGAGAATGCTTCTTTTGCTTTTATGACTTGCACCTATCTGCCGCAGGTTGCAAGTGCTCTCCTGACAAATATTCTTGCCTTAGACACTCAAATTTGTTTTGTATATGCGGATTGGACAAGAGATTTGTTCTTCTTCGATATGCTATGAAGGATCTTAATAAATTGATTGAAGCATTGCAAGGGGAATCAGATGCTATTAAATTGTGGGCAAATAAAGATGCTGGAACAGATTCTGCTGATAATGAAGATGTTTGCACTGATAAGCTAGATTTGGACAAAGACATGTGCAAAACCGAGAGTCATGAAGAAAGAGAAAGCTCATCTTGTGCAGGAACCAAGAAGTCAAATTTAAATGCACCTACCAGTCCTTGTAGTTGTGTTTCTTCCAAGTTAGTTGAGTCTGAGTTTCCCCTTGGAAATTTTATTTCATCATATGGCACTATAGGTAGTTGTATCGGCAATATAAATGATAAAAATTTGGTCAAGGAGGAAAAAGTTAAGGCAGGGCAGGCAGGTTTTATGGATTTGAATTTGGATGTTGCATCTGGAGATAAGGAAAATTATTTGTTGCTTACTGATAACCATCAAAATAAGGGAATTGCAATTGAAAAAGTTTGTTATTCAGATGCAGCAAAGGAACAAGACAAAATGGAACTTGATGTTGACAGTAATCTATCAGACTCATTTGGTCTTCTTAAGAAAGATTATTCACCATGTTCAAGGGATGCTTGCAATTCAAGTTCATTTCATGGTGAGAAGTTGTTTGGGGTTGATCTACAAATGAATCCAGATGCAGAAGTGCCATCTAACAGTGTAGTTAAAATGGAAGTTATGGAAACCTCCAATACTGATATACCATTGACAGACCAAAGTTACTTAATACAAAACCTTTACAAGTCTGTTGAACCTTTAAGTATGGGCTCCGTTGTGTATGGAAAGCTGTGGTGCAGTAAGCATGCGATATTTCCAAAAGGATTCAAGAGCCGTGCTAAGTTCTTTAGCTTGCTTGATCCAGCAAGAATCTGTAGCTATATTTCAGAAGTTCTTGATGCGGGGTTTCTTGGGCCTATTTTTAAGGTTACCATGGAAGGGCATCCAAGCGAGGCTTTCACAAATGTCTCAGCAGAGAAGTGCTGGGAATCAATTTTAGAGAGACTAATTGATGAAGTATTAAGGCGGAGGAGTCTAGGGGAACTAGAACTTCCCCCCCTGGAACTCTTGCGAAGCATTAATGGTCTTAAAATGTTTGGATTCCTTTCCCCATCCATTATTCAGGCCATTGAAGCTCAGGATCCTGGTCATCAATGCATGGAGTATTGGAATTACAAGGAAGTTGTTTCTGTATCTTCATCCGGTGGCAGTCATAATGGTTCAAGTAGCCCTTTAGGTGACATCAATTCGATGAAGCAGAATCATGAGAATTCACTGATGAGAGGAAGTGGACAATCATTTGAAGAAATGAGATCAATACTAGAAAGATTGTTAAGAAAGGCAAGTCCTGATGAGTTGAGCACCTTGTGTAAGTTATTCAGCTCTGAAGCAGAGGGTGCTCAATGGAGAGTGGCATTTGTAAGGCTGATTGAGGAGATCCAGAAAAAAACTTGTAGATAA 3540 0.4062 MPTRLSPQNLSPSLLIRLLIEGVETVSGLFYLLIGDFNETPSTAAATLKQVLLLLCKGCLATELPWCFLQNFPCHGGCHWQHCLSLDWVNNGFSVSDKCLKLQNSSIGVKILCSLTSMLWHLLLVNQYKEAICLVRQLYTLQDCPSRKTLKNDHAAESSGSPRNKKISARWDPNEACQPTIDEAPVFYPTIEEFEDTLGYIGKIRPQAEPHGICRIVPPSCWVPPCPLKEKNIWENAKFPTRIQQIDLLQNREPMRKKTKGRRRKRRKHSKMGTCRRRTNSGLEANVASEPEEKFGFQSGSDFTLADFQRYADFFKECYFGIKDAKEDLNIGDDNDQKRWEPSVEDIEGEYWRIIEQPTDEVEVYYGADLEIGALGSGFPKATSLTNSLDQYAVSGWNLNNFPRLPGSVLCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALEDVMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSKQCRKTSLSHDKLLLGSAQKAVRALAELEIGKETSKSLKWKSVCGKEGVLTKAVETRIKMEEERLDSFPTHVNLLKMDSDFDMDKERECFFCFYDLHLSAAGCKCSPDKYSCLRHSNLFCICGLDKRFVLLRYAMKDLNKLIEALQGESDAIKLWANKDAGTDSADNEDVCTDKLDLDKDMCKTESHEERESSSCAGTKKSNLNAPTSPCSCVSSKLVESEFPLGNFISSYGTIGSCIGNINDKNLVKEEKVKAGQAGFMDLNLDVASGDKENYLLLTDNHQNKGIAIEKVCYSDAAKEQDKMELDVDSNLSDSFGLLKKDYSPCSRDACNSSSFHGEKLFGVDLQMNPDAEVPSNSVVKMEVMETSNTDIPLTDQSYLIQNLYKSVEPLSMGSVVYGKLWCSKHAIFPKGFKSRAKFFSLLDPARICSYISEVLDAGFLGPIFKVTMEGHPSEAFTNVSAEKCWESILERLIDEVLRRRSLGELELPPLELLRSINGLKMFGFLSPSIIQAIEAQDPGHQCMEYWNYKEVVSVSSSGGSHNGSSSPLGDINSMKQNHENSLMRGSGQSFEEMRSILERLLRKASPDELSTLCKLFSSEAEGAQWRVAFVRLIEEIQKKTCR 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0014 1179 SMART cupin_9 391 557 IPR003347 -
Dere10g0014 1179 Pfam C5HC2 zinc finger 646 698 IPR004198 -
Dere10g0014 1179 ProSiteProfiles JmjC domain profile. 391 557 IPR003347 -
Dere10g0014 1179 Pfam JmjC domain, hydroxylase 424 540 IPR003347 -
Dere10g0014 1179 FunFam Putative lysine-specific demethylase JMJ16 942 1080 - -
Dere10g0014 1179 SMART fyrc_3 1000 1092 IPR003889 GO:0005634
Dere10g0014 1179 SMART JmjN_1 183 224 IPR003349 -
Dere10g0014 1179 SMART fyrn_3 950 994 IPR003888 GO:0005634
Dere10g0014 1179 SUPERFAMILY Clavaminate synthase-like 364 577 - -
Dere10g0014 1179 Gene3D Cupin 169 541 - -
Dere10g0014 1179 ProSiteProfiles FYR domain FYRC motif profile. 996 1086 IPR003889 GO:0005634
Dere10g0014 1179 MobiDBLite consensus disorder prediction 256 275 - -
Dere10g0014 1179 Pfam F/Y rich C-terminus 998 1084 IPR003889 GO:0005634
Dere10g0014 1179 Pfam F/Y-rich N-terminus 947 991 IPR003888 GO:0005634
Dere10g0014 1179 Gene3D - 941 1080 - -
Dere10g0014 1179 Pfam jmjN domain 185 218 IPR003349 -
Dere10g0014 1179 PANTHER LYSINE-SPECIFIC DEMETHYLASE 178 813 - -
Dere10g0014 1179 ProSiteProfiles JmjN domain profile. 184 225 IPR003349 -
Dere10g0014 1179 ProSiteProfiles FYR domain FYRN motif profile. 936 994 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0014 Dere-ChrDere10 205291 215271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0014 135 766 JUMONJI Transcription Factor Family AT1G30810 60.184 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere10g0014 JmjC 1.8e-47 CL0029