Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere10g0012 ATGCTATCTATGCAACCCAAAAGGCAAAATATGGGCTTCTTTTCTCAACTATCGCTTCATTTTGCAATATATATTATCCCTTTAGTTATCCACTGCCATTTTCTTCGTGTATCCTCATCAACCACTCTAAACATAACCACAGATACAGAAGCTTTGATCTCATTTAAGTCTCAATTGAGTAATGTTGATCCTCCGCACCCATTATCTTCTTGGAACCAGAGTTCATCATCCCCATGCAATTGGATTGGTGTAACCTGCAACAAGCTTGGCCAAAGAGTTATTGGCTTGAATCTTTCAGGCTCAGGACTCTCAGGTCAGTTAAGCCCTTACATAGGTAACCTTTCTTTTCTTAAGTCCCTCCAGTTGCAGGATAACCAATTCGAAGGAGTGATTCCTGAACAAATTGGCCATCTGATTCGGTTAAGGGCTCTAAACATGAGTTCTAACAGAATAGTGGGTATGCTTCCTTCAAACATCACTCGCTTAACGGAGCTTGTCACACTTGACTTGTCGTCTAACAATATTGTCAGCCAAATTCCTCAAGATATTGGCAGCTTGACAAAGCTTCAAGTCTTGAAATTGAGAAGCAATCACTTGTATGGCGCAGTTCCACCAAGTCTAGGGAATATTTCATCACTCACAAATATCAGTTTTGGCACCAACACTCTAAGCGGTGGGATTCCCAGTGAATTTGGTAGGCTTAAGAACTTAATTGAGCTTGATCTCACTATTAACAATCTCACTGGGACGATTCCTCCTTCTATATATAACTTATCTTCCCTAGTTAATTTGGCTTTAGCTTCCAACAATTTATGGGGTGATATTCCTGAGGATGTTGGACGTAGACTTCCAAATCTTCTGGTGTTCAATTTCTGCTTTAATAGATTCACAGGTAGAATTCCTGGGTCTTTGCACAATCTCACCAACATTCGAGTCATTCGCATGGCTTCAAACCATTTGGAAGGAACAGTGCCACCGGGTCTTGGGAATCTCCCATTCCTTCGAATGTATAATATAGGGTATAATAGGATAGTTAGCTCAGGGGACACAGGTCTAGACTTCATTACTTCATTGGCAAACAGCACTCTCTTAAACTTTCTTGCAATTGATGGCAATAGGTTGGAAGGTGTAATTCCAGAGACCATTGGAAATCTCTCTAAGGTTCTCTCAAAATTATACATGGGAGGGAATCGTTTCTATGGAAACATACCCGCCTCCCTTGGCAATCTTAGAGCCTTGAGTTTATTAAACTTGAGTCACAACGCAATCTCTGGAGAAATCCCTTTCAAGTTAAGCCGATTAGAGGAACTGCAAGAGTTGATTCTGTCTGGGAATAAGATATCAGGAAGTATTCCAAATTCCCTTGGTAGCCTCCAAAAGTTAAACAAAATTGATTTGTCAAGCAATGAGCTTGTGGGTGAGATACCTACAAGTTTTGGAAACTTCCAGAGCATTCTCTTCATGGACTTATCTAACAACAAGCTCAATGGAAGCATACCTAGAGAAGTACTCAATCTCCCAGCTCTGAACAACGTTTTAAATGTGTCTAAGAACTTTTTAAGTGGTTCTTTGCCTCAGGAAGTAGGGAATTTGATCAGAGTTTCTACCTTAGACTTCTCTGACAACCTTTTATTTGGTGAAATCCCCAGCTCAATTAGCAATTGTCTAAGCTTGGAAAATCTATTTTTGGCACGAAATAAGCTTTCAGGTCTTATTCCTAAAACTCTAGGAGATATTAGAGGCTTGGAAATTCTAGACCTTTCCTCCAACCAACTCTTTGGATCCATTCCTGTTGAACTTCAAAATCTAAATGCCCTTCAGTTATTGAACCTCTCCTATAATGATTTAGAAGGAGTCATTCCTAGTGGTGGAGCTTTCCAGAATCTCTCGTCTCTCCATTTAGAAGGCAATAAGAAGCTTTGTTTGCCTTCTACATGTGTGACTCAAGGCCATGGAAGAAAGATGCTCATAATTTATATCATCATAGCTATTGCGGGTACATTGACACTATGTTTGACTATTGGCTTGCTCTTGTATGTAAGGACCAGAAAAATAAAGGTAACAACATCATCTGAAATGGCAAAGCCATATCATCCAATAATCTCTTACGATGAACTTCGTCGAGCAACCCAGGACTTCAGCCAAGAGAATTTATTGGGAATTGGCAGCTTTGGTTCAGTCTATAGAGGCCATCTAAGTGAAGGGACTATTGGTACTGTTGCAGTAAAAGTCCTGGACACTTTAAGAACAGGTTCTCTGAAGAGCTTCTTTGCAGAATGTGAGGCTTTGAGAAATGTAAGGCATCGAAATCTCGTCAAGCTGATCACATCATGTTCAAGTACAGACTTTAAGAACAATGAATTTCTGGCTCTGGTTTATGAGTTCCTATGTAATGGCAATTTGGAAGATTGGATTAAGGGAAAGAGAAAGCATGTAAATGGGAATGGGTTGAACCTTATGGAAAGACTGAATATTGCTATTGATGTTGCTTGTGCATTGGATTACTTGCACAATGATAGTGAAACTCCTATTGTGCATTGTGATTTGAAGCCCAGCAATATTCTTTTGGGTGAAGAAATGACTGCAAAGGTGGGAGATTTTGGATTGGCTAGGTTGTTGACTAAAACACCGACTAATCAGGTCTCGATAAGCTCCACTCATGCCCTCAGAGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGTAGCAGGAGATACATACAGTTTCGGAATTGTGTTGCTAGAGCTCTTTTCTGGGAAGAGCCCGACGGACGATAGCTTCACAGGAGGCCTAAGCCTAACGCGATGGGTTCACTTAGCACTCCCAAACAAGATTGAGCAAGTCATAGACCCTCAGCTTCTATCACTCATTTTTTATAATGACCTTGCCGAGGATCCAAATCTACAACTCGATTGTGTGACTTCAATTCTGGGAGTTGGGCTATTATGCACTGCAGATTCTCCAGATGGACGCCTTAACATGAAAGATGCTGTTGTCAAATTACAAGCTTCTAGAGACACTCTTTTGAAACTCACTGAAAATAAGAGTCCTTTGGAGCATTAG 3081 0.406 MLSMQPKRQNMGFFSQLSLHFAIYIIPLVIHCHFLRVSSSTTLNITTDTEALISFKSQLSNVDPPHPLSSWNQSSSSPCNWIGVTCNKLGQRVIGLNLSGSGLSGQLSPYIGNLSFLKSLQLQDNQFEGVIPEQIGHLIRLRALNMSSNRIVGMLPSNITRLTELVTLDLSSNNIVSQIPQDIGSLTKLQVLKLRSNHLYGAVPPSLGNISSLTNISFGTNTLSGGIPSEFGRLKNLIELDLTINNLTGTIPPSIYNLSSLVNLALASNNLWGDIPEDVGRRLPNLLVFNFCFNRFTGRIPGSLHNLTNIRVIRMASNHLEGTVPPGLGNLPFLRMYNIGYNRIVSSGDTGLDFITSLANSTLLNFLAIDGNRLEGVIPETIGNLSKVLSKLYMGGNRFYGNIPASLGNLRALSLLNLSHNAISGEIPFKLSRLEELQELILSGNKISGSIPNSLGSLQKLNKIDLSSNELVGEIPTSFGNFQSILFMDLSNNKLNGSIPREVLNLPALNNVLNVSKNFLSGSLPQEVGNLIRVSTLDFSDNLLFGEIPSSISNCLSLENLFLARNKLSGLIPKTLGDIRGLEILDLSSNQLFGSIPVELQNLNALQLLNLSYNDLEGVIPSGGAFQNLSSLHLEGNKKLCLPSTCVTQGHGRKMLIIYIIIAIAGTLTLCLTIGLLLYVRTRKIKVTTSSEMAKPYHPIISYDELRRATQDFSQENLLGIGSFGSVYRGHLSEGTIGTVAVKVLDTLRTGSLKSFFAECEALRNVRHRNLVKLITSCSSTDFKNNEFLALVYEFLCNGNLEDWIKGKRKHVNGNGLNLMERLNIAIDVACALDYLHNDSETPIVHCDLKPSNILLGEEMTAKVGDFGLARLLTKTPTNQVSISSTHALRGSIGYIPPEYGWGEKPSVAGDTYSFGIVLLELFSGKSPTDDSFTGGLSLTRWVHLALPNKIEQVIDPQLLSLIFYNDLAEDPNLQLDCVTSILGVGLLCTADSPDGRLNMKDAVVKLQASRDTLLKLTENKSPLEH 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere10g0012 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Dere10g0012 1026 Pfam Leucine rich repeat N-terminal domain 47 87 IPR013210 -
Dere10g0012 1026 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1020 - -
Dere10g0012 1026 SMART LRR_typ_2 114 138 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 186 210 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 307 331 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 410 431 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 234 258 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 434 458 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 579 602 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 603 628 IPR003591 -
Dere10g0012 1026 SMART LRR_typ_2 162 185 IPR003591 -
Dere10g0012 1026 PANTHER UNNAMED PRODUCT 30 552 - -
Dere10g0012 1026 Gene3D Phosphorylase Kinase; domain 1 694 795 - -
Dere10g0012 1026 Gene3D Ribonuclease Inhibitor 197 278 IPR032675 -
Dere10g0012 1026 Gene3D Ribonuclease Inhibitor 44 196 IPR032675 -
Dere10g0012 1026 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515
Dere10g0012 1026 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524
Dere10g0012 1026 Pfam Protein tyrosine and serine/threonine kinase 716 931 IPR001245 GO:0004672|GO:0006468
Dere10g0012 1026 SMART serkin_6 713 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0012 1026 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 795 - -
Dere10g0012 1026 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 244 351 - -
Dere10g0012 1026 SUPERFAMILY L domain-like 388 643 - -
Dere10g0012 1026 Gene3D Transferase(Phosphotransferase) domain 1 796 1022 - -
Dere10g0012 1026 Gene3D Ribonuclease Inhibitor 279 349 IPR032675 -
Dere10g0012 1026 SUPERFAMILY L domain-like 47 344 - -
Dere10g0012 1026 FunFam Inactive leucine-rich repeat receptor-like protein kinase 356 649 - -
Dere10g0012 1026 SUPERFAMILY Protein kinase-like (PK-like) 693 1007 IPR011009 -
Dere10g0012 1026 ProSiteProfiles Protein kinase domain profile. 713 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere10g0012 1026 Gene3D Ribonuclease Inhibitor 350 649 IPR032675 -
Dere10g0012 1026 CDD STKc_IRAK 719 1008 - -
Dere10g0012 1026 FunFam Leucine-rich repeat receptor-like protein kinase 45 205 - -
Dere10g0012 1026 Pfam Leucine rich repeat 557 616 IPR001611 GO:0005515
Dere10g0012 1026 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere10g0012 Dere-ChrDere10 185105 188650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere10g0012 47 1016 Receptor kinase-like Gene Family AT3G47570 42.312 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dere10g0012 PK_Tyr_Ser-Thr 8.1e-38 CL0016