Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere1000214g0001 ATGAGAATAAATCCTACCACTTCTGGTCCTGAGGTTTCTGCGCTTGAAAAAAAAAACCTGGGACGTATCGCTCAAATAATTGGTCCGGTACTGGATGTAGCTTTCCCCCCAGGGAAGATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCTGTATTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTGGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTCAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGCTTCGTTCAAGCAGGATCCGAAGTATCCGCCTTATTGGGTCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCCGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCCCATTTAGATGCTACTACCGTACTATCAAGAGGATTGGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGGATCGTTGGTGAAGAACACTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTAGACGAATTATCCGAAGAGGATCGCTTAACTGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAGCAGGCCTTTTATTTGGTAGAAGTGAAGGAAATTATTTTATCTACTAATAGTGGACAAATTGGAGTATTACCCAATCACGCGCCTATTGCCACAGCTGTAGATATCGGTATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAGATCACAGTTTTAGTAAATGATGCGGAGAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATATGATTTCGTAA 1782 0.4186 MRINPTTSGPEVSALEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLSKAEGKRQTIEANLALRRARTRVEAINMIS 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere1000214g0001 593 CDD F1-ATPase_delta 469 583 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere1000214g0001 593 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Dere1000214g0001 593 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Dere1000214g0001 593 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 470 542 IPR036771 -
Dere1000214g0001 593 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Dere1000214g0001 593 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere1000214g0001 593 Coils Coil 556 576 - -
Dere1000214g0001 593 Hamap ATP synthase epsilon chain [atpC]. 461 588 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere1000214g0001 593 Gene3D - 98 374 IPR027417 -
Dere1000214g0001 593 Gene3D - 549 593 - -
Dere1000214g0001 593 FunFam ATP synthase subunit beta 98 374 - -
Dere1000214g0001 593 FunFam ATP synthase subunit beta 375 489 - -
Dere1000214g0001 593 CDD F1-ATPase_beta_CD 99 377 - -
Dere1000214g0001 593 NCBIfam F0F1 ATP synthase subunit beta 20 479 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere1000214g0001 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Dere1000214g0001 593 NCBIfam ATP synthase F1 subunit epsilon 470 590 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere1000214g0001 593 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 477 - -
Dere1000214g0001 593 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 546 589 IPR020547 -
Dere1000214g0001 593 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Dere1000214g0001 593 CDD ATP-synt_F1_beta_C 379 482 - -
Dere1000214g0001 593 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Dere1000214g0001 593 PANTHER ATP SYNTHASE 17 479 - -
Dere1000214g0001 593 FunFam ATP synthase subunit beta 79 424 - -
Dere1000214g0001 593 SMART AAA_5 164 356 IPR003593 GO:0016887
Dere1000214g0001 593 FunFam ATP synthase epsilon chain, chloroplastic 469 547 - -
Dere1000214g0001 593 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 470 541 IPR020546 GO:0015986
Dere1000214g0001 593 Gene3D - 375 488 IPR024034 -
Dere1000214g0001 593 Gene3D - 18 97 - -
Dere1000214g0001 593 CDD ATP-synt_F1_beta_N 19 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere1000214g0001 94 429 Primary Pumps ATPases(2) AT1G20260 27.049 6.44e-27 112