Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere1000199g0002 ATGTGCATTATCCACATATACAATGCCAAGATCACCGAGCAACAAAAGCCAAAGAACTACAATGTGCAAGATTTCTTCAAAGATAGGAAGAACAAGGTTAAAAAATATGAAACGTGGAAGGTTAGCTATAGAACCAACCAGGATAAGAAAGGTTGTAAGGTAGCATTTGAAAATATAAAAAAGGAGTTAGTGAAAAAAGCTTATGAGTTTTCCATCCTATGTGGGGTTGATGCTTGCATAATAATCTATGGCCCTAATTTTGAAGGCCAAGCTCCTAAATCTGTAGAAAAATGGCCACAAGATCCCAAAAAGGTGAGGTGCATTATCCATAAGTACATTGCCAAGATCATCGAGCAACAAAAGCTGAAGAACTACGATGTGCAAGATTTCTTCAAAGATAGGAAGAACAAGGTTGACGCTCAGATATCCAACGTCTGA 438 0.3767 MCIIHIYNAKITEQQKPKNYNVQDFFKDRKNKVKKYETWKVSYRTNQDKKGCKVAFENIKKELVKKAYEFSILCGVDACIIIYGPNFEGQAPKSVEKWPQDPKKVRCIIHKYIAKIIEQQKLKNYDVQDFFKDRKNKVDAQISNV 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere1000199g0002 145 ProSiteProfiles MADS-box domain profile. 36 86 IPR002100 GO:0003677|GO:0046983
Dere1000199g0002 145 Gene3D - 48 138 IPR036879 GO:0003677|GO:0046983
Dere1000199g0002 145 SUPERFAMILY SRF-like 40 134 IPR036879 GO:0003677|GO:0046983
Dere1000199g0002 145 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 52 86 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere1000199g0002 63 139 Type I MADS-box Gene Family AT5G55690 43.590 1.68e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere1000199g0002 SRF-TF 1.4e-10 No_clan