Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere1000187g0002 ATGGGTCTGCGGGTGCAGTGGGTATGGGAGGACAAGTCTGAGACAAAGAGATCTGGGAAGGAAAAAAGAGAGAGAGAGACCAGACATACATATATACTTCAGGTGGTTGCTCTTAATTCGTTTTCTTCTGCTTTCACTTTCCTTTTACCAGAAGATTGCTATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAGCTTCACAGAAGAGGACACAACCTCCCTTGGAAACTTAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCATCATGACCCTTCCAGAGCCCTCGGGGACCTCACTGGGATTAAGAAGCACTATTCTCGCAAGCACGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCCAGACGCGACAGTTTCATCACACATAGGGCGTTTTGCGATGCACTAGCGCAAGAAAGTGCGAGGCACCCCACAAATCTAAACCCTATTGGGACTCATCATCTTTATGGCACAAACCACCACATGAGCTTAGGCCTGTCCCAGCAAGTGGGTTCTCCAATTTCCCAAATTCACCATCAAAACCAAAACCCTAGTAGTAGTATCTTGCGTCTAGGCAGTGCAAAGTTTGAGTCGATAATCCCTCCCTCAAACCATCCAACAATGCCAAATTCCTCAGCTTTTTTCATGGCCGATCCGATTCCGAACCAAGCACCGTTCCCGATGAACAAGCCGTCATCCTCCATACATGGTCTTATGCAGCTTCCTGATCTTCAAGGCAATGCTAATAATAACACCAACAACACTTCGTCCAATCCTTTCAACCTTGGATTCTTTCCCAACAACAACATAATCACTGATCAGTTCAATAACCCTATTGGTGATCATCATCACCAAGTTGGCTCCAGTTTGGCCTCATCAGTACTCTTCAGCAATCCAATGCAACACGGGAATGTTTCTCCGGCCGCCGCGCATATGTCGGCGACAGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCGACCACAACCACGTCGAATAACAGCAGTACTTCGTCGTTACTAAGAGGAATGGGTGGTTCGTCAACCCATGGTGCTAAATCGGATAATGATGCCACTTTTGGAAGTGAAAGTACTACAGAGAACGACCATCATCATCAACATCTCCGAGGACTGATGAACTCTCTGGCCAACGGGAACACTTCCATATTTGGAGGGAATGAATCAAACAATTTGCAACAAAATCTGGGTGTGAGCTTTGGAGGGTCTGATAAATTGACGTTAGACTTTCTGGGTGTTGGAGGAATGGTGAGAAGCATTAATGGTGGATTTCCACAGAGAGATCAACCACTACACCATGGCAGCATCAATATGAGTTCTTTGGACCCCGAACAGGCAAGCCAATCTTTCAGAAGCACAAAGATGCAATAG 1578 0.4645 MGLRVQWVWEDKSETKRSGKEKRERETRHTYILQVVALNSFSSAFTFLLPEDCYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLNPIGTHHLYGTNHHMSLGLSQQVGSPISQIHHQNQNPSSSILRLGSAKFESIIPPSNHPTMPNSSAFFMADPIPNQAPFPMNKPSSSIHGLMQLPDLQGNANNNTNNTSSNPFNLGFFPNNNIITDQFNNPIGDHHHQVGSSLASSVLFSNPMQHGNVSPAAAHMSATALLQKAAQMGSTTTTSNNSSTSSLLRGMGGSSTHGAKSDNDATFGSESTTENDHHHQHLRGLMNSLANGNTSIFGGNESNNLQQNLGVSFGGSDKLTLDFLGVGGMVRSINGGFPQRDQPLHHGSINMSSLDPEQASQSFRSTKMQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere1000187g0002 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Dere1000187g0002 525 SMART c2h2final6 149 169 IPR013087 -
Dere1000187g0002 525 SMART c2h2final6 73 95 IPR013087 -
Dere1000187g0002 525 SMART c2h2final6 114 144 IPR013087 -
Dere1000187g0002 525 Gene3D Classic Zinc Finger 127 206 - -
Dere1000187g0002 525 FunFam protein indeterminate-domain 12-like 52 120 - -
Dere1000187g0002 525 MobiDBLite consensus disorder prediction 501 525 - -
Dere1000187g0002 525 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Dere1000187g0002 525 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Dere1000187g0002 525 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Dere1000187g0002 525 MobiDBLite consensus disorder prediction 493 525 - -
Dere1000187g0002 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 49 498 IPR031140 -
Dere1000187g0002 525 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Dere1000187g0002 525 Gene3D Classic Zinc Finger 55 121 - -
Dere1000187g0002 525 MobiDBLite consensus disorder prediction 387 436 - -
Dere1000187g0002 525 MobiDBLite consensus disorder prediction 387 426 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere1000187g0002 68 490 C2H2 Transcription Factor Family AT2G02080 50.673 1.79e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere1000187g0002 zf-C2H2_jaz 3.2e-05 CL0361