Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere1000165g0003 ATGAGAATAAATCCTACCACTTCTGGTCCTGAGGTTTCTGCGCTTGAAAAAAAAAACCTGGGACGTATCGCTCAAATAATTGGTCCGGTACTGGATGTAGCTTTCCCCCCAGGGAAGATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCCGCGCCTGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGCCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCTGTATTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTGGCTCTAGTCTACGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTCCGAGATGTCAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGCTTCGTTCAAGCAGGATCCGAAGTATCCGCCTTATTGGGTCGAATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCCGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCCCATTTAGATGCTACTACCGTACTATCAAGAGGATTGGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGGATCGTTGGTGAAGAACACTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTAGACGAATTATCCGAAGAGGATCGCTTAACTGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAGCAGGCCTTTTATTTGCAAATTGAAGAAATGACCTTAAATCTTTGTGTACTGACCCCAAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATTATTTTATCTACTAATAGTGGACAAATTGGAGTATTACCCAATCACGCGCCTATTGCCACAGCTGTAGATATCGGTATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAGATCACAGTTTTAGTAAATGATGCGGAGAAGGGTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATATGATTTCGAGTACGTCTATGTTTTTACTTTACGAATATGATATTCTTTGGGCATTTCTAATAATATCGAGTCTTATTCCTATTTTGGCATTTCTAATTTCTGGAATTTTAGCCCCGATTAGCAAAGGACCAGAGAAACTTTCTAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTCGATATATTGGGGGTATCCGTATTTATAGAAGCTTTGATTTTCGTGCTTATCCTAATTGTTGGTTCAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAA 2211 0.4052 MRINPTTSGPEVSALEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLQIEEMTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLSKAEGKRQTIEANLALRRARTRVEAINMISSTSMFLLYEYDILWAFLIISSLIPILAFLISGILAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDILGVSVFIEALIFVLILIVGSVYAWRKGALEWS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere1000165g0003 736 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Dere1000165g0003 736 Gene3D - 484 567 IPR036771 -
Dere1000165g0003 736 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 481 562 IPR036771 -
Dere1000165g0003 736 NCBIfam ATP synthase F1 subunit epsilon 482 610 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere1000165g0003 736 Gene3D - 98 374 IPR027417 -
Dere1000165g0003 736 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 483 561 IPR020546 GO:0015986
Dere1000165g0003 736 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 566 609 IPR020547 -
Dere1000165g0003 736 CDD ATP-synt_F1_beta_C 379 480 - -
Dere1000165g0003 736 Gene3D - 569 610 - -
Dere1000165g0003 736 CDD F1-ATPase_beta_CD 99 377 - -
Dere1000165g0003 736 FunFam ATP synthase epsilon chain, chloroplastic 481 567 - -
Dere1000165g0003 736 Gene3D NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 611 736 IPR038430 -
Dere1000165g0003 736 Coils Coil 576 596 - -
Dere1000165g0003 736 Gene3D - 375 483 IPR024034 -
Dere1000165g0003 736 FunFam ATP synthase subunit beta 79 424 - -
Dere1000165g0003 736 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Dere1000165g0003 736 PANTHER ATP SYNTHASE 17 481 - -
Dere1000165g0003 736 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Dere1000165g0003 736 CDD F1-ATPase_delta 483 603 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere1000165g0003 736 FunFam ATP synthase subunit beta 375 485 - -
Dere1000165g0003 736 SMART AAA_5 164 356 IPR003593 GO:0016887
Dere1000165g0003 736 FunFam ATP synthase subunit beta, chloroplastic 18 97 - -
Dere1000165g0003 736 FunFam NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic 617 736 - -
Dere1000165g0003 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Dere1000165g0003 736 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 476 - -
Dere1000165g0003 736 Hamap ATP synthase subunit beta [atpB]. 18 488 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere1000165g0003 736 Hamap ATP synthase epsilon chain [atpC]. 481 608 IPR001469 GO:0015986|GO:0045261|GO:0046933
Dere1000165g0003 736 NCBIfam F0F1 ATP synthase subunit beta 20 476 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere1000165g0003 736 Hamap NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 619 736 IPR023043 GO:0016651
Dere1000165g0003 736 FunFam ATP synthase subunit beta 98 374 - -
Dere1000165g0003 736 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Dere1000165g0003 736 CDD ATP-synt_F1_beta_N 19 98 - -
Dere1000165g0003 736 Gene3D - 18 97 - -
Dere1000165g0003 736 Pfam NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 639 735 IPR000440 GO:0008137
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere1000165g0003 94 429 Primary Pumps ATPases(2) AT1G20260 27.049 1.20e-26 112