Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere1000066g0008 ATGTCTAATTTGACTACTTCTGCATCTGGCGAAGGCAGTGTTTCAATTGGTACCAATCATCCTCCTCATCAACAACACTTCGCTCCGCCATCATCAGCTTCAACTCAGTCTCATCCTGTGAAGAAAAAAAGAAACCTCCCTGGCAACCCAGACCCAGATGCTGAAGTGATCGCCTTGTCCCCCAAGTCTCTCCTAGCAACGAACAGGTTCATATGCGAGATCTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGCAGAGATCGAACAAAGAGGTGAGGAAGAAGGTGTACGTGTGCCCCGAACTCTCCTGCGTCCACCACCACCCTTCAAGGGCTCTCGGCGACCTCACGGGGATCAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGCTCAAAGAGGTACGCCGTTCAATCCGATTGGAAGGCTCATTCCAACACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCGAGGCCAGAAATGCAGGTACCCTCTTGGCTTGGCCCACCCACTACCTCTACCATAGATCACCACCGTCAAGCTCATCATCTTCTCAACCATGAAAGTCCAAACCCCAACCCTATTGGTCCCACCACTCTTCTTCCTGCCCACCAACTACCAGCGCCTTCTCCGCACATGTCAGCCACAGCCTTGCTTCAGAAAGCGGCTCAGATGGGTGCGACCATCAGCAAAACCGGCTCGCCCATGCTCAGGACCCACAATAGTAGTCACGTGTCTGCTGGTGAGTCTGCTGGTTTGGACTTGTCCTCTTCATCTGGACGTCACGTGACCATGTCCATGACCACTACCTCTCATGGCTTCTTGGCTCCTTTCTCTTTCTCTTCTGCTGCTGCAGCTGGTCTTCCTCCTTGTGATCAGTTTGGAGGAGGAGCTAGTTCTCTTGAGGAGGCTTTCATTGGGGGGATTTTGAATCCCAAGAAGGTCGACGGAAACTTGCATGACAGTGTTCTTTTCAAAACAACCGATTCCGGCCGTCGGAGAACCGGAGCGGCGGAGGATGGCGGTGGCGTTGGGAACGAGGGTTTGACGAGAGATTTCTTGGGTCTGAAACCTCTTTCCCCTAATGATATTCTCAGCTTTGCTGGTATTGGAAACTGCATGAGCTCCTCTTCCTCCTCCCATGAGCAACGAATTCATCAATCCCGATGGCAAGGTTAA 1254 0.5159 MSNLTTSASGEGSVSIGTNHPPHQQHFAPPSSASTQSHPVKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYVCPELSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSNTCGTREYRCDCGTLFSRPEMQVPSWLGPPTTSTIDHHRQAHHLLNHESPNPNPIGPTTLLPAHQLPAPSPHMSATALLQKAAQMGATISKTGSPMLRTHNSSHVSAGESAGLDLSSSSGRHVTMSMTTTSHGFLAPFSFSSAAAAGLPPCDQFGGGASSLEEAFIGGILNPKKVDGNLHDSVLFKTTDSGRRRTGAAEDGGGVGNEGLTRDFLGLKPLSPNDILSFAGIGNCMSSSSSSHEQRIHQSRWQG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere1000066g0008 417 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Dere1000066g0008 417 MobiDBLite consensus disorder prediction 1 42 - -
Dere1000066g0008 417 SUPERFAMILY beta-beta-alpha zinc fingers 69 165 IPR036236 -
Dere1000066g0008 417 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 214 IPR031140 -
Dere1000066g0008 417 Gene3D Classic Zinc Finger 67 168 - -
Dere1000066g0008 417 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Dere1000066g0008 417 SMART c2h2final6 70 92 IPR013087 -
Dere1000066g0008 417 SMART c2h2final6 146 166 IPR013087 -
Dere1000066g0008 417 MobiDBLite consensus disorder prediction 1 55 - -
Dere1000066g0008 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Dere1000066g0008 417 FunFam protein indeterminate-domain 12-like 49 117 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere1000066g0008 5 183 IDZ Gene Family AT3G50700 77.095 3.30e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere1000066g0008 zf-C2H2_jaz 5.9e-05 CL0361