Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere1000059g0207 ATGCGGACGCGGTTCTCTCGTCGTGAAAGAATTAATTCTATTTTGGAATTCTCTGTAAGAGCTGCGGAACTAACAAGTCTATTAGAAAATAAAATTAGCAACTTTGTCACTAGTTTTCAATTGGATGAGATCGGTCGAGTGGTGTCCGTTGGAGATGGTATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTGGAATTTGCCAGCGGTGTCAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTGGGAATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGGGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGGGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGGCCACCTCTGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTCGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCCCCATTACTGATGGACAAATCTGTTCGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGCTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACCGAAACAACCACAATATGCACCACTTCCAATTGAAAAAGAAATTTTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCATTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAAGTAGTATAAACCCGGAATTACTACAATCCCTGAAAGGTGGATTAACTAACGAAAGAAAGATAGAACCAGATAAATTCTTAAAAGAACAAGCAAAAACTTACATATGA 1566 0.4451 MRTRFSRRERINSILEFSVRAAELTSLLENKISNFVTSFQLDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVIPITDGQICSETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKEILVIYAAVNGFCDRMPLDRISQYERAIPSSINPELLQSLKGGLTNERKIEPDKFLKEQAKTYI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere1000059g0207 521 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 398 518 - -
Dere1000059g0207 521 Gene3D - 18 109 IPR023366 -
Dere1000059g0207 521 CDD ATP-synt_F1_alpha_C 400 520 IPR000793 GO:0015986
Dere1000059g0207 521 Hamap ATP synthase subunit alpha [atpA]. 17 521 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere1000059g0207 521 CDD ATP-synt_F1_alpha_N 43 108 - -
Dere1000059g0207 521 Pfam ATP synthase alpha/beta family, beta-barrel domain 43 108 IPR004100 GO:0046034|GO:1902600
Dere1000059g0207 521 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 165 389 IPR000194 GO:0005524
Dere1000059g0207 521 CDD F1-ATPase_alpha_CD 110 392 IPR033732 GO:0032559
Dere1000059g0207 521 FunFam ATP synthase subunit alpha 17 109 - -
Dere1000059g0207 521 PIRSF F_ATPase_subunit_alpha 17 521 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere1000059g0207 521 Pfam ATP synthase alpha/beta chain, C terminal domain 396 493 IPR000793 GO:0015986
Dere1000059g0207 521 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 17 519 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere1000059g0207 521 NCBIfam F0F1 ATP synthase subunit alpha 19 498 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere1000059g0207 521 Gene3D - 110 396 IPR027417 -
Dere1000059g0207 521 FunFam ATP synthase subunit alpha 397 521 - -
Dere1000059g0207 521 FunFam ATP synthase subunit alpha, mitochondrial 110 396 - -
Dere1000059g0207 521 ProSitePatterns ATP synthase alpha and beta subunits signature. 380 389 IPR020003 GO:0005524
Dere1000059g0207 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 395 IPR027417 -
Dere1000059g0207 521 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 26 110 IPR036121 GO:0046034|GO:1902600
Dere1000059g0207 521 Gene3D - 397 521 IPR038376 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere1000059g0207 76 395 Primary Pumps ATPases(2) AT4G38510 26.444 2.15e-24 104