Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2403 ATGGCGGCATCTTCTTCGTCGGCATCGCTCTTCGGAATTAGAGAAGGAGATCAGAATCCAATGAATCAGCAGCTTTCATCGACTCCAACTTCATCAACAAACGCTGCTGCACCACCCCAGAAGAAGAAGAGAAACCAACCAGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAGCTTCACAGAAGAGGACACAACCTCCCTTGGAAGCTTAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACGTGCGTCCACCATGACCCTTCCAGAGCCCTCGGTGACCTCACTGGGATTAAGAAGCACTATTCTCGCAAGCACGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGCGACTGTGGCACTCTCTTCTCCAGAAGGGACAGTTTTATCACCCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGACAACCATCGAACCTGATAAGTAGCACCATTGGGAGTCAGCTCTATGGAAGTAGCAACATGGGCTTAGGCTTATCTCAGGTGGGTCCCCACATCTCCTCCATACATGACCAGCACAACAACCAAACCGGCGAGATTTTGCGGCTCGGAGGTGGCGGCGGCCGGACCGGGCAGTTTGACCACCTTCTTCCACCGTCTTTAATCAGACCACCACCTCCACCGCCACCACCACAGCAGATGACCAACCTTCCTTCACCTCCAACCTTCTTCATGCCATCAGAACAATCAAACCAAAACTATCACCACCACCATGATCATCAAGAAGGGTTTGTTCAAAACAAGCCATTCCATGGACTAATGCAATTTTCTGACCTTCACAACAACAGCAACAGCAACAGCAATAATTCCCCTACTTCTGCAACTAATAACAACACCCTCTTTAACCTTCCTCCATTCCTCTCCAGTACCACCAATAACAACAACGCGTTATCTGAACACTTCAACAGTAATGGAAGCAGTACTGGAGGAGGAAACAATGAAGGCTCGAATAACTTCTTCGCTGACCAAATCACAAGCTCTAGTGCGCCTTCTCTCTTCAGCACATCTCTGCAAAACAGCAACACCAGCAATAGTATCCCTCACATGTCTGCGACAGCACTGCTTCAGAAGGCTGCTCAGATCGGAGCGAGTTCCAGCAACAACAGCAGCACCGCTTCGCTTCTCAGAAGTTTCGGAAGCTCGTCCTCTAGCAGTGGATCGAAAGCTGATCATCATCATCACAGGCCACAACAGCAGCTCGTTGGTGCAAACTATGGCTCCATTTTTGGCGGGAACGATGAACAGAACAATAATCTGCAGGACTTGATGAACTCTTTCACGAGTACTGTTGGTAGTGGTGGTCGGTATGAAGGGTATGATCATCAGAATAATCATTCCAACAGTAGAGGAGACCTGAAACTGCCTGTAGGGTCTGACAGGCTCACGCGAGATTTCCTTGGCGTAGGGCAGATAGTGAGAAGCATGAGTGGAGGAATATCACCCAGAGATCATCACCTTCATCAACAGCATCAACAGCTCCATCAACAGCAGCAACAGCATGGGTTTATGAACTTGAGCTCTTTGGAGACTCACAGAAATAATGCTGCGCCGTCAGGGCAATCTTTTGGAGGCGGAGGGAATTTTCAGTGA 1794 0.4877 MAASSSSASLFGIREGDQNPMNQQLSSTPTSSTNAAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLISSTIGSQLYGSSNMGLGLSQVGPHISSIHDQHNNQTGEILRLGGGGGRTGQFDHLLPPSLIRPPPPPPPPQQMTNLPSPPTFFMPSEQSNQNYHHHHDHQEGFVQNKPFHGLMQFSDLHNNSNSNSNNSPTSATNNNTLFNLPPFLSSTTNNNNALSEHFNSNGSSTGGGNNEGSNNFFADQITSSSAPSLFSTSLQNSNTSNSIPHMSATALLQKAAQIGASSSNNSSTASLLRSFGSSSSSSGSKADHHHHRPQQQLVGANYGSIFGGNDEQNNNLQDLMNSFTSTVGSGGRYEGYDHQNNHSNSRGDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHHLHQQHQQLHQQQQQHGFMNLSSLETHRNNAAPSGQSFGGGGNFQ 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2403 597 MobiDBLite consensus disorder prediction 501 523 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 1 47 - -
Dere09g2403 597 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Dere09g2403 597 MobiDBLite consensus disorder prediction 432 454 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 324 390 - -
Dere09g2403 597 FunFam protein indeterminate-domain 12-like 49 117 - -
Dere09g2403 597 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Dere09g2403 597 MobiDBLite consensus disorder prediction 323 390 - -
Dere09g2403 597 Gene3D Classic Zinc Finger 49 118 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 267 285 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 546 567 - -
Dere09g2403 597 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 265 309 - -
Dere09g2403 597 SMART c2h2final6 146 166 IPR013087 -
Dere09g2403 597 SMART c2h2final6 70 92 IPR013087 -
Dere09g2403 597 SMART c2h2final6 111 141 IPR013087 -
Dere09g2403 597 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Dere09g2403 597 Gene3D Classic Zinc Finger 124 203 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 432 464 - -
Dere09g2403 597 MobiDBLite consensus disorder prediction 1 55 - -
Dere09g2403 597 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Dere09g2403 597 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 563 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2403 Dere-ChrDere09 36790076 36793944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2403 40 231 IDZ Gene Family AT2G02070 82.587 1.46e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g2403 zf-C2H2_jaz 3.7e-05 CL0361