Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2399 ATGGCATCGGCCTTTGTCAAGCTGGACGATTCCCCCATGTTTCAGAAGCAGATATGTTCTCTTGAACAAACGGCTGATGAGTTAACAGATCGCTGCCAGAAACTATACAAAGGGTGTAAAAAATTTATGGCTGCTTTGGGGGATGCTTATAATGGAGACATTGCCTTTGCTGATGCATTAGAAGTATTTGGTGGTGGGCAGGACGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAGTTTATTAGTGCACTTCGTGAGCTTGCTACTTTTAAAGAGCTTCTGCGGTCACAGGTGGAGCATGTCTTGATTGATCGGCTGGTGCAGTTCATGAATGTTGATTTACAAGATGCTAAGGATTCTCGCCGTCGTTTTGACAAAGCTGTACATTCTTATGATCAGGCACGAGAAAAGTTTGTGTCTTTGAAGAAGAATACACGTGAAGACATTGTTGCTGAATTAGAAGAGGGTCTTCAAAATTCGAAGTCAGCATTTGAGAAAAGTCGCTTCAATCTAGTAAACTCACTGATGAACGTTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCTTTAGTGCAATAATGGATGCTCATCTAAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCCTATATTCACCAGGTATTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATATAGAACACAAGCTGAGCTAGACAACATACGAGCTTCAAGCAATGCAGATTCTTTATTTGGTGCCGATGGCACCCGGGTTGTTGGTTTGAACTCATATAAAAGCTCTGAAGCACAGATCAATTCTGCACCCCAAGGTGAGATTCAAACAATTAAACAAGGCTATCTACTAAAACGATCATCAAGATCGCGAGGAGATTGGAAGCGGAGGTTCTTCGTACTTGACAACCAAGGAAATTTATATTACTACAGAATGAAAGGAGCCAAACCAATGGGTTCTCAATCATACAATTTTAGTCGTTCAACAGAACAAAACAGTGGCATGTTTGGGAGATTCCGCTCTAGGCACAACAGGGCAGCATCGCTAAATGAAGAAATTCTTGGTTGTCGTGCAGTGGATCTGTGCACATCAACTATAAAGATAGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATAATTTCTCCATCCAAAACGTACACACTACAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGAAGCTATCACGTCACTTTTTAATTCTCAGTTTCTTCAACAGCCTAATCGAGTTGCATTGCATCAAGAAAATAATGACTCAGCCACTGGTGCTTCACGGAACTGTCAATCACAGTATAGTCACAAACCATTGACTGATGACATATATTGCAAGGAAGTGGATAGTGTCTCTAAGATTTTACGCGGAATTCCTGGTAATGATAAATGTGCTGAGTGTAGTGCTACTGAACCAGACTGGGCATCTCTTAACCTTGGAATATTGCTCTGTATTGAATGTTCTGGTGTTCATCGAAATCTTGGAGTTCACATCTCAAAGGTGAGATCTATAACTTTAGATGTCAAGGTTTGGGAACCTACTGTTTTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAACTCTGTCTGGGAGGGATTGCTACATGATAATGAAAGAAAAGGTGAGTCAAATGCACCAATTAAACCATGCTCCACAGATGCCTTTCAAGAAAAGGAAAAGTACATCCAAGCAAAGTACATAGAGAAATCACTAATCCTCAAAGAGGCTGTACGTGGGAGTCCTGTTGCCAAAAGAATCTGGCAAGCAGCTCAAGCTATAAATATACGTGAAGTGTATCGCCTCATTGTCACATCGGATGCAACTCTGTTAAACACCAAATATGATGATGTAGTTCACCATGCTGATATAGAATACTCGGGTTTCGGACATAACACTACTGAAAACCAGCAAGATCCTGAAGCCTGTCAGAGAACTGAGGTCCCTAATATTCCTGTGAGCTGTCTCCAAGGTTGTTCACTGTTGCATCTGGCATGTCATTCTGACAGTGCACTAATGGTTGAATTGTTGCTCCAATTTGGTGCTGATGTAAATATGCGTGATTATCATGGAAAGACTCCCTTGCATCATTGCATCTCCAGTGGAAAAAATCCTTTGGCGAAGCTTCTACTTAGAAGGGGCGCAAGACCATCAATTAAAGATGGCGATGGATTCACTGCCCTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTTGCTGAATCCCAGTAA 2340 0.4124 MASAFVKLDDSPMFQKQICSLEQTADELTDRCQKLYKGCKKFMAALGDAYNGDIAFADALEVFGGGQDDPVSVSIGGPVISKFISALRELATFKELLRSQVEHVLIDRLVQFMNVDLQDAKDSRRRFDKAVHSYDQAREKFVSLKKNTREDIVAELEEGLQNSKSAFEKSRFNLVNSLMNVEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNIRASSNADSLFGADGTRVVGLNSYKSSEAQINSAPQGEIQTIKQGYLLKRSSRSRGDWKRRFFVLDNQGNLYYYRMKGAKPMGSQSYNFSRSTEQNSGMFGRFRSRHNRAASLNEEILGCRAVDLCTSTIKIDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITEAITSLFNSQFLQQPNRVALHQENNDSATGASRNCQSQYSHKPLTDDIYCKEVDSVSKILRGIPGNDKCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSVWEGLLHDNERKGESNAPIKPCSTDAFQEKEKYIQAKYIEKSLILKEAVRGSPVAKRIWQAAQAINIREVYRLIVTSDATLLNTKYDDVVHHADIEYSGFGHNTTENQQDPEACQRTEVPNIPVSCLQGCSLLHLACHSDSALMVELLLQFGADVNMRDYHGKTPLHHCISSGKNPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESQ 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2399 779 Gene3D Arf GTPase activating protein 461 607 IPR038508 -
Dere09g2399 779 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 609 IPR001164 GO:0005096
Dere09g2399 779 Pfam Putative GTPase activating protein for Arf 481 602 IPR001164 GO:0005096
Dere09g2399 779 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Dere09g2399 779 ProSiteProfiles Ankyrin repeat region circular profile. 719 750 - -
Dere09g2399 779 ProSiteProfiles Ankyrin repeat profile. 719 751 IPR002110 GO:0005515
Dere09g2399 779 Gene3D - 661 779 IPR036770 -
Dere09g2399 779 Gene3D - 290 446 IPR011993 -
Dere09g2399 779 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Dere09g2399 779 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Dere09g2399 779 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Dere09g2399 779 Pfam Ankyrin repeats (3 copies) 679 750 IPR002110 GO:0005515
Dere09g2399 779 Pfam PH domain 296 427 IPR001849 -
Dere09g2399 779 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Dere09g2399 779 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Dere09g2399 779 SUPERFAMILY ArfGap/RecO-like zinc finger 479 602 IPR037278 -
Dere09g2399 779 SMART ANK_2a 686 715 IPR002110 GO:0005515
Dere09g2399 779 SMART ANK_2a 719 748 IPR002110 GO:0005515
Dere09g2399 779 ProSiteProfiles Ankyrin repeat profile. 686 718 IPR002110 GO:0005515
Dere09g2399 779 ProSiteProfiles Ankyrin repeat region circular profile. 686 717 - -
Dere09g2399 779 Coils Coil 229 249 - -
Dere09g2399 779 CDD PH_ACAP 297 432 - -
Dere09g2399 779 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Dere09g2399 779 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Dere09g2399 779 CDD BAR_SFC_plant 16 217 IPR035670 -
Dere09g2399 779 SUPERFAMILY PH domain-like 288 440 - -
Dere09g2399 779 SUPERFAMILY Ankyrin repeat 682 771 IPR036770 -
Dere09g2399 779 CDD ArfGap 482 596 - -
Dere09g2399 779 PANTHER CENTAURIN/ARF 3 778 IPR045258 GO:0005096
Dere09g2399 779 SMART PH_update 295 430 IPR001849 -
Dere09g2399 779 SMART arf_gap_3 478 609 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2399 Dere-ChrDere09 36610756 36647530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2399 478 596 C2H2 Transcription Factor Family AT3G07940 42.500 1.48e-19 87.8