Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere09g2376 | ATGTCAGAGTCAAACGCAATAGCAAATGGATTGGCGGGTGCAGGTGGCGGCATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTAAATACCCGCCAGCAAACCGAGAGAACGCTCAAGGGGAAGAAGGTGGGCCTTCGTCATTCCTCAAACACGCTTCTTCAGATCCTTCAGGTTATTAGAAGCGAGGGGTGGGGCGGACTATACAGCGGCCTCAGGCCTTCTCTTATTGGAACTGCTGCTTCTCAGGGCATTTACTACTACTTTTATCAAGTTTTTAAAAACAAGGCTGTGGCCACTGCTGCTGCCCGCAAAGTCAAAGGTCATGGAGACGGTACTGTTGGCATTCTTGGTTGGCTTGTTGTGGCTGCTATTTCTGGGTCCTTGAATGTTTTGTTCACAAACCCAATATGGGTTATAGTGACTCGCATGCAGACACATACTCAAGCAGAAAGAAAAATTATGGAGGGGAAGAAAGAAGCTTTAAGGAGAGAAGCTTCTGAAAGTAGTTCTGCAGGTTCAACAGTACAGGACAAATTAGCTGAATTGGATTCTATAAAACCTCAACCATATGGAACTATACAAGCAGCAAACGAAATCTATGGTGAAGCAGGTATTACTGGATTTTGGAAGGGTGTCATCCCTTCTTTGATTATGGTGTGCAATCCATCAATCCAGTTTATGATTTATGAGAGCTCGTTAAAGCATCTAAGGGCAAAACGCTCTTCTAAGAAGGAGGGGAATAAAAGTGTAACTGCTTTGGAGGTATTTTTGCTGGGAGCCTTAGCAAAACTTGGAGCTACTGTCTCAACATATCCCCTGTTGGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAATAGCTCATTAAGATACTCAGGTACTTTTGATGCTATACTTAAAATGATCCGTTATGAGGGATTGCCTGGCTTTTATAAGGGGATGAGCACAAAGATAGTACAGAGTGTTTTTGCTGCTTCTGTTCTATTTATGTTTAAGGAGGAGCTTGTTAAGGCTTTCTTGGTGTTGACAGATAAGAGCAAGAAAATTCTCTCAAAATCTTAA | 1077 | 0.4262 | MSESNAIANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKGKKVGLRHSSNTLLQILQVIRSEGWGGLYSGLRPSLIGTAASQGIYYYFYQVFKNKAVATAAARKVKGHGDGTVGILGWLVVAAISGSLNVLFTNPIWVIVTRMQTHTQAERKIMEGKKEALRREASESSSAGSTVQDKLAELDSIKPQPYGTIQAANEIYGEAGITGFWKGVIPSLIMVCNPSIQFMIYESSLKHLRAKRSSKKEGNKSVTALEVFLLGALAKLGATVSTYPLLVVKSRLQAKQEIGGNSSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMFKEELVKAFLVLTDKSKKILSKS | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere09g2376 | 358 | Gene3D | Mitochondrial carrier domain | 1 | 176 | IPR023395 | - | |
| Dere09g2376 | 358 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 5 | 349 | IPR044712 | GO:0006862|GO:0055085 | |
| Dere09g2376 | 358 | SUPERFAMILY | Mitochondrial carrier | 5 | 339 | IPR023395 | - | |
| Dere09g2376 | 358 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 115 | 237 | IPR018108 | - | |
| Dere09g2376 | 358 | MobiDBLite | consensus disorder prediction | 159 | 178 | - | - | |
| Dere09g2376 | 358 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 4 | 97 | IPR018108 | - | |
| Dere09g2376 | 358 | Gene3D | Mitochondrial carrier domain | 177 | 353 | IPR023395 | - | |
| Dere09g2376 | 358 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 252 | 343 | IPR018108 | - | |
| Dere09g2376 | 358 | Pfam | Mitochondrial carrier protein | 116 | 239 | IPR018108 | - | |
| Dere09g2376 | 358 | Pfam | Mitochondrial carrier protein | 251 | 344 | IPR018108 | - | |
| Dere09g2376 | 358 | Pfam | Mitochondrial carrier protein | 4 | 96 | IPR018108 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere09g2376 | Dere-ChrDere09 | 36152466 | 36158937 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere09g2376 | 26 | 344 | Chloroplast and Mitochondria Gene Families | AT1G25380 | 27.356 | 1.41e-29 | 115 |