Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2363 ATGGGCAAGTCCAGCAAGAAATCAGCTCTAAAAGTTGACGCTGCTCCGACTGTTGTTCCGCCTTTGAAGTCTGCCAAGAAAGGCAAGAGGGAAGCTGAGGATGAACTTGAGAAGCTAGTGAGTGCTAAGAAGCAGAAGAGAGATGAGGTTGCTGAGAAGAAGAAGGAAGCAAAGGTGCAGAATAAAAAGAAGCAAAGTAGTTCTGATGATTCGTCCTCATCAGATTCTGAGGAAGACAAGAAACTTGCTGCAAAGACTGTTCTTCCTTCAAAGAAGCAAACTTCTAAGAATGGTTCTCTAATTGCCCAGGTGAAGAAGGGCAAGCCAGCTAGTAGTTCCGGTTCTTCTGAATCCTCACATGATTCTGATGACAGTGATGCTGGAAAATCCAAGGTGAAGCAAGTTGCTACAAAGAAGAATGGAACTGTTGCCACAAAGAAGAAAGTTGAAGCAAGTGACAGTTCAGATACTGATAGTAGCTCAGATGAAGAAAATGATAAGAAAACTAAAGTTGCTCCATTGTCCAAGAAGTTACCTGTGGCTGCTGCTAAGAAAGTTGAGTCTGATAGTGAAGCCTCAGAATCTGATTCTGGCAGCAGCTCTGATGAGGATGATGTACCTAAATCATCCAAGAAGTTGCCTGCTGCTCCTGCTGCAGCTAAGAGTATACCTGCCAAAAAAGTTGAGTCAAGTGATGACACAACCTCTGATAGTAGCTCAGATGAAGATGATGATATGAAAACACACGTACCTGCAGCATCAAAAAAGTTGCCTGCGTCAGCAGGTACTCCAAAGAAAGTTGAGAGCAGTGACGGCTCAGATGATGAATCAAGTGAAAGTTCTGATGAAGATAATGGTACAAAGTCGACTGTTGCAGCAGTGTCCAAGCCTTCTGCTACTCCAAAGAAGGTTGAATCAAGTGACAACTCTGATTCTGATGGCAGTACCTCTGACGAAGACAACAAAAATAAAAAGGGAGCGAAGACTGCATCCACGCTTAAGTTAGCAAAGGCTCCTGAAAAGAATTCTAAGTCAAAGGATAGTTCTGATGAGGAAGATGATTCCTCTGACAGTGATTCTGAGGAAGAAAAGGAGACTGCTCCTAAGGTTAATAATAAAGCAGCAGCTGGTGTGAAGATGGCTAAAAGGGAGACTAGTGAAAGTTCATCTGAAGATGATTCTTCAGAAGATGAGAAACCTGCTCCCAAGGCTAATATTAAACCCAAGGCTAATATTAAAGCAGCAGTTGGTGTGAAGACTGTTAAAAAGGATTCTAGTGAAAGTTCATCTGAAGATGACTCTTCAGGAGATGAGGATAAGATGGATGTTGATGAGGATAGTAGTTCTGAAGAAACTGAAGAGCCACAAAAGAAAAAGATGAAAGCCTTGCCTGTGAAAGCTGTGAAAGAAAGCAACGATAGTTCAGACAGTTCTGAGGAAAGTGAAGAGGAGAATGAGAAACCTTTAACAACTCCTCAGAAAAATGCTAGGGATGTGGAGATGGTTGATGTTTCATCAATGAAGTCAAATGGAAAGAAAGCTCCTAAAACCCCAGCTACTCCAAAAGTACAAAATGCAACAATAAAGACACTTTTTGTTGGAAATTTGTCATATAGCATAGAACGGGCTGATGTGGAAAATTTCTTCAAAGATTGTGGAGAAGTGGTTGATGTTCGTTTATCCTTTGATGAGGAGGGGAGATTTAAAGGCTATGGACATGTTGAATATGCCACAGCAGAAGAAGCACAAAATGCTCTCCAGTTGAATGGGAAAGAATTGTTGGGTCGTCCTGTCAGACTTGATTTAGCTCGTGAAAAGGGGGCATATACTCCAAATAGCAGCAACTGGAGCAACTCATTCCAGAAGAGTGGACGAGCTCAAGTGCGCACAATATTTGTCAAGGGTTTTGATACATCCCAAGGTGAAGATGAGATTAGAACAAATCTGGAAGGGCATTTCAGTTGTGGAGAGATTATAAGGATGTCGATTCCGAAAGATTATGACACTGGTGCATCTAAGGGGTTTGCCTACATAGACTTCAAGGATGCTGATGGTTTCAACAAAGCGCTAGAGTTGAATGGAAGTGAGCTTGGAGGTCATTACTTGACTATTGATGAAGCAAAACCTCGATCTGATAGTCAAGGTGCAAGTGGGGGTAGAGGTGGTGGTGGAAGGAGTGGGGGTAGAGGTGGCGGAAGGGGATGGGATAGGGATGGTGGTGGTCAATTTGGTGGAAGGCGTGGAGGTGGTAGAGGTGGCCGTGGAAGAGGTGGCGGTGGCAGGGGGCGTGGAACACCCCATAAACCAAGCCTTGCGGCTGAAGGCACAGGGACAAAGACGACTTTTGCTGATGATTAG 2358 0.4355 MGKSSKKSALKVDAAPTVVPPLKSAKKGKREAEDELEKLVSAKKQKRDEVAEKKKEAKVQNKKKQSSSDDSSSSDSEEDKKLAAKTVLPSKKQTSKNGSLIAQVKKGKPASSSGSSESSHDSDDSDAGKSKVKQVATKKNGTVATKKKVEASDSSDTDSSSDEENDKKTKVAPLSKKLPVAAAKKVESDSEASESDSGSSSDEDDVPKSSKKLPAAPAAAKSIPAKKVESSDDTTSDSSSDEDDDMKTHVPAASKKLPASAGTPKKVESSDGSDDESSESSDEDNGTKSTVAAVSKPSATPKKVESSDNSDSDGSTSDEDNKNKKGAKTASTLKLAKAPEKNSKSKDSSDEEDDSSDSDSEEEKETAPKVNNKAAAGVKMAKRETSESSSEDDSSEDEKPAPKANIKPKANIKAAVGVKTVKKDSSESSSEDDSSGDEDKMDVDEDSSSEETEEPQKKKMKALPVKAVKESNDSSDSSEESEEENEKPLTTPQKNARDVEMVDVSSMKSNGKKAPKTPATPKVQNATIKTLFVGNLSYSIERADVENFFKDCGEVVDVRLSFDEEGRFKGYGHVEYATAEEAQNALQLNGKELLGRPVRLDLAREKGAYTPNSSNWSNSFQKSGRAQVRTIFVKGFDTSQGEDEIRTNLEGHFSCGEIIRMSIPKDYDTGASKGFAYIDFKDADGFNKALELNGSELGGHYLTIDEAKPRSDSQGASGGRGGGGRSGGRGGGRGWDRDGGGQFGGRRGGGRGGRGRGGGGRGRGTPHKPSLAAEGTGTKTTFADD 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2363 785 CDD RRM1_NUCLs 530 606 IPR034349 -
Dere09g2363 785 MobiDBLite consensus disorder prediction 431 450 - -
Dere09g2363 785 SUPERFAMILY RNA-binding domain, RBD 520 619 IPR035979 GO:0003676
Dere09g2363 785 SUPERFAMILY RNA-binding domain, RBD 616 741 IPR035979 GO:0003676
Dere09g2363 785 MobiDBLite consensus disorder prediction 143 173 - -
Dere09g2363 785 Coils Coil 22 63 - -
Dere09g2363 785 CDD RRM2_NUCLs 630 707 IPR034350 -
Dere09g2363 785 MobiDBLite consensus disorder prediction 24 86 - -
Dere09g2363 785 MobiDBLite consensus disorder prediction 1 499 - -
Dere09g2363 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 605 IPR000504 GO:0003723
Dere09g2363 785 MobiDBLite consensus disorder prediction 88 118 - -
Dere09g2363 785 Gene3D - 618 738 IPR012677 -
Dere09g2363 785 MobiDBLite consensus disorder prediction 284 305 - -
Dere09g2363 785 SMART rrm1_1 630 705 IPR000504 GO:0003723
Dere09g2363 785 SMART rrm1_1 530 601 IPR000504 GO:0003723
Dere09g2363 785 MobiDBLite consensus disorder prediction 451 466 - -
Dere09g2363 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 629 709 IPR000504 GO:0003723
Dere09g2363 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 631 702 IPR000504 GO:0003723
Dere09g2363 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 531 598 IPR000504 GO:0003723
Dere09g2363 785 Gene3D - 413 615 IPR012677 -
Dere09g2363 785 MobiDBLite consensus disorder prediction 384 404 - -
Dere09g2363 785 MobiDBLite consensus disorder prediction 119 133 - -
Dere09g2363 785 MobiDBLite consensus disorder prediction 706 785 - -
Dere09g2363 785 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 625 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2363 Dere-ChrDere09 35766371 35774217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2363 489 697 Eukaryotic Initiation Factors Gene Family AT4G34110 28.638 8.96e-14 73.2