Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2347 ATGGGACGTGGAAAGATTGAGATCAAGAGGATTCAGAACACCACCACCAGGCAGGTCACCTTCTCCAAACGCAGGGCTGGGCTGGTGAAGAAGACTCATGAGCTTTCTGTTCTCTGTGATGCCCAGATTGGCCTCATCGTCTTCTCCGGCACTGGCAGGATGTTTCAGTACTGCACCGAACCTTTCAGAATGGAGCAAATCATTGAAAGATATCAGAGAGCTACTGGAGCTCGCATACCTGAACATGATAGCCGGGAGACTCTGCGTCTTGAACTGGGAATTCAAAGGTATGTTGGAGAGGGCATCAACTCCTTACAGTACGAGGAACTGACTAAGATTGAACAAGAACTTGAGAACTCTGTCACCAAGGTCCGAAACCGTAAGAATGATCTCTTGCAACAGCAGCTGGATAATCTGCGAAGGAAGGAAAGAATCATGGAAGAGGAAAACAGCAATTTGACCCATTGGGTAAGCAAATTAATTTACATTACATGCCTAGAATCTGGATTGATTCAAGAGCAGAGAACAGTGATGGAGGACGAAGGGCAAATGGTGGAGCAGTTTCCATTTTATGAGGACCAGCCTTCTTCTGCTGCTGCTGCTGCTGGTAGCATCCTTCAACTAACTCCCCTGCAGCTTCCTCCTCATCTTCACCCTTATCTTCAGCTCGCTCAGCCCAACATTCATGACTCTCACCCTCAACAATGAGCAAAATCGGAGATGAATGCTAGCTTTGTTGAGAATTATGATGAAGTTCCAGATAAAGATTAA 771 0.463 MGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIVFSGTGRMFQYCTEPFRMEQIIERYQRATGARIPEHDSRETLRLELGIQRYVGEGINSLQYEELTKIEQELENSVTKVRNRKNDLLQQQLDNLRRKERIMEEENSNLTHWVSKLIYITCLESGLIQEQRTVMEDEGQMVEQFPFYEDQPSSAAAAAGSILQLTPLQLPPHLHPYLQLAQPNIHDSHPQQXAKSEMNASFVENYDEVPDKD 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2347 256 MobiDBLite consensus disorder prediction 227 256 - -
Dere09g2347 256 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Dere09g2347 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Dere09g2347 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 MobiDBLite consensus disorder prediction 227 242 - -
Dere09g2347 256 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Dere09g2347 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 Pfam K-box region 89 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g2347 256 ProSiteProfiles K-box domain profile. 73 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g2347 256 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Dere09g2347 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere09g2347 256 Coils Coil 107 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2347 Dere-ChrDere09 35355949 35360309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2347 1 231 MADS-box Gene Family AT5G23260 42.748 1.11e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere09g2347 K-box 6.4e-17 No_clan