Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2331 ATGAATTACTTTCTGGTGTGTCAGTCTCGCTTGTGGATGCTCACCATTGTGTTGTACACATGCATATGGATCCCAGTGCTTCAGATAAAGAAGGCTCTCGTCACTCTTCTGTGTGGAGGAGGAGCTATGTTGCAGACAGATCAGTGGCCAGAGATTCCTTTACTTCCCGCGACAAGGTACGAGGATTTGCAGAGACATGATTGTTGTTCCTTTGAGGGAGACATGGAGGACGAGGTTTGCTGCTCCATTTGCTTGTTGGAGTTCGAGGGTGACGATGTAGTGAGCAAGCTGGGTAGGTGTGGGCATGTGTTCCACGTAAGCTGCATTGACGGATGGCTTCACAGGAGCCACTTCACTTGCCCACTTTGTAGATCTTTTTTATTCTCTCAGCATGATCAGATTCATGTTATGAATAAATAG 420 0.469 MNYFLVCQSRLWMLTIVLYTCIWIPVLQIKKALVTLLCGGGAMLQTDQWPEIPLLPATRYEDLQRHDCCSFEGDMEDEVCCSICLLEFEGDDVVSKLGRCGHVFHVSCIDGWLHRSHFTCPLCRSFLFSQHDQIHVMNK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2331 139 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
Dere09g2331 139 PANTHER RING ZINC FINGER PROTEIN-RELATED 54 128 - -
Dere09g2331 139 Pfam Ring finger domain 81 124 IPR001841 -
Dere09g2331 139 SUPERFAMILY RING/U-box 72 130 - -
Dere09g2331 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 128 IPR013083 -
Dere09g2331 139 SMART ring_2 81 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2331 Dere-ChrDere09 34993380 34993799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2331 8 139 C3H Transcription Factor Family AT4G38140 34.848 6.91e-23 85.9