Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere09g2311 | ATGATTACATCAAGTAACACCTATCCATTTGCAGGTGAATCTTGCCATCCAGACAAGGTCAACTCACGGGGTGCAGTGGTGGTGAGTGAGACGTCAATCCAGTCAGAGGGTGGAGATGTGAAGAGCTCTAGTGATGGGACGCATCAGAGCCGCGAAAATATAAATGGAGCGACAGAAAGCGTCGTTTGGTTCATCGGCGTTTTCCAGAAGCATCTCCTTAGGGTTTATGAGGATTTGGAGGCACTCCATTCTATACGAAAAATCATGGCTTTCTGGGGTGTGGAAATCAAACCCGGAAAACCTTTTACTCACAAATTTGATGACTCGAAAGGACGACTCCATATTTCAATGGCCACTTTGGGGTTAGGTGCTGCCACGGCTAAAAGCGTACTTCAGTGTAATGTAGGAAACCGAAGCCCTGTTTATCTGTGCTCTCTGTCTTCTGGAATGAGTGAGTCATTGCAACTTAATTTGGAATTTGAAGAGGTTGATGAAGTCATCTTTTCAGTACTTGGTCAACGGAGCATTCACCTCTGCGGTTTTTATCTGGGTAGTAGCCGGAATACCAGTATGATTGAGGAGTCAGAATCATATGGAGAAGATATTGCGAACACAGAGACAGAGAGATCTGATTGCAGTGATGAAGATGAGTATGAAGATAGTTTTATTGATGATGATGCTGATCCAGAGGCCTACCCACCATCACCTGTTTCTGATAAAGAGGAAGCTTCACATGATAACAAACAAAAAGGTAGCCGCCGAAGACTACGGAGGAAGTACCAAAGAATAGAGTCAGATGATGATAAGATCTTTGAAGATAATATCATAGTCAATTGTAGTAAGCGTGACCAAGCAACAACATCCAATGATGATGACAACTTGCGAATTTCATCTCTTTACAAGAGTAAAACTACTGCAAGGATCTTGTTCCAGGAAATGAATGTTAGTGATGATAAGAGAGGTTATGCCAGCAACAACAATAGTGACGATGTTGGCAATATTATTAAATCAAATTCAAAAGTGGAAAATGTTCTTGTCAATAGTCAGACACATAGGGATATTGAGCTTCCAGGAAATGTTGCATTGCCTTACGCTGTAACGGATCCTGTAAAATGTAGAGGAATGAAGAGGAAAAAGAAAGAACAGAGTTCCAAAGGTTCACATTTTCAAGGTGACAGTTACTTTAAAGATTACAAAGCCGCAAGAGATGAGGCAGAGTCTGATAATTTGATCCTCAAATTTCCTGAAGATAAAGAACTAGATTGGCAACAACACAATGGAGAGAGAGGGAACAACAGTACTCATGACTTCCCTGATGCAAATCAATCTGATGATAGAAAAGTGAAAAAAAGGAAGAAAAAGAATAAAAGTCAGGGGAATGTAGAAGTTAATAGTTCTGATTTGCCTCAATCATCTGTTGAGCAAAACATTAGGGTTATGAAAGAGGATGAAAACATTATAGCCGATGCAAAGCCTTCTGAAGTTAAAACATTGTCTAGTGGACTAGTTGTACTGGAGCTAGAAATGGGGACAGAAGATGGAAAAATTGCTGCATCAGGAAGAAAGATCAGTGTCTATTACACTGGCAAGCTGAAGGACAGTGAGGAAGTCTTCGAGTCAAATGTTGGCCATGCTCCTTTCAAGTTTCGCCTTGGTAAAGGACAAGTTATAGAAGGTTGGGATGTTGGCCTTGAAGGTATGCAAATGGGAGGAAAGAGGAGACTCATAATCCCACCATCAATGGGGTTTGGTAGTGAAGGATGCAGCCAGAAAATACCACCGGACTCATGGCTGGTTTATGACTTCGAACTGGTTAGAGTCCATTGA | 1827 | 0.4138 | MITSSNTYPFAGESCHPDKVNSRGAVVVSETSIQSEGGDVKSSSDGTHQSRENINGATESVVWFIGVFQKHLLRVYEDLEALHSIRKIMAFWGVEIKPGKPFTHKFDDSKGRLHISMATLGLGAATAKSVLQCNVGNRSPVYLCSLSSGMSESLQLNLEFEEVDEVIFSVLGQRSIHLCGFYLGSSRNTSMIEESESYGEDIANTETERSDCSDEDEYEDSFIDDDADPEAYPPSPVSDKEEASHDNKQKGSRRRLRRKYQRIESDDDKIFEDNIIVNCSKRDQATTSNDDDNLRISSLYKSKTTARILFQEMNVSDDKRGYASNNNSDDVGNIIKSNSKVENVLVNSQTHRDIELPGNVALPYAVTDPVKCRGMKRKKKEQSSKGSHFQGDSYFKDYKAARDEAESDNLILKFPEDKELDWQQHNGERGNNSTHDFPDANQSDDRKVKKRKKKNKSQGNVEVNSSDLPQSSVEQNIRVMKEDENIIADAKPSEVKTLSSGLVVLELEMGTEDGKIAASGRKISVYYTGKLKDSEEVFESNVGHAPFKFRLGKGQVIEGWDVGLEGMQMGGKRRLIIPPSMGFGSEGCSQKIPPDSWLVYDFELVRVH | 608 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere09g2311 | 608 | Gene3D | Nucleoplasmin core domain | 85 | 187 | - | - | |
| Dere09g2311 | 608 | MobiDBLite | consensus disorder prediction | 30 | 52 | - | - | |
| Dere09g2311 | 608 | MobiDBLite | consensus disorder prediction | 459 | 473 | - | - | |
| Dere09g2311 | 608 | MobiDBLite | consensus disorder prediction | 423 | 473 | - | - | |
| Dere09g2311 | 608 | SUPERFAMILY | FKBP-like | 480 | 607 | - | - | |
| Dere09g2311 | 608 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 520 | 608 | IPR001179 | GO:0003755 | |
| Dere09g2311 | 608 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 516 | 605 | IPR001179 | GO:0003755 | |
| Dere09g2311 | 608 | MobiDBLite | consensus disorder prediction | 210 | 227 | - | - | |
| Dere09g2311 | 608 | Pfam | Nucleoplasmin-like domain | 91 | 183 | IPR041232 | - | |
| Dere09g2311 | 608 | MobiDBLite | consensus disorder prediction | 193 | 259 | - | - | |
| Dere09g2311 | 608 | MobiDBLite | consensus disorder prediction | 372 | 392 | - | - | |
| Dere09g2311 | 608 | Gene3D | - | 469 | 608 | IPR046357 | GO:0003755 | |
| Dere09g2311 | 608 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 129 | 607 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere09g2311 | Dere-ChrDere09 | 34528178 | 34546717 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere09g2311 | 519 | 605 | Calmodulin-binding Proteins | AT5G48570 | 40.230 | 1.42e-15 | 78.2 |