Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2302 ATGTCTGCTGCTTCCTCATCGACACCGTTCATCGGAATCAGAGAGGAAAACCCAATTCTGATGTCACAGCAACAACAACACCAATCCTCCACAGCTGCTTCGTCTACAGCTCCAACCACAGCAGTGTCTCAGAAGAAAAGGAGAAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAGCTTCACAGAAGAGGACACAACCTCCCTTGGAAACTTAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCATCATGACCCTTCCAGAGCCCTCGGGGACCTCACTGGGATTAAGAAGCACTATTCTCGCAAGCACGGCGAGAAGAAATGGAAGTGCGAGAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAGGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCCAGACGCGACAGTTTCATCACACATAGGGCGTTTTGCGATGCACTAGCGCAAGAAAGTGCGAGGCACCCCACAAATCTAAACCCTATTGGGACTCATCATCTTTATGGCACAAACCACCACATGAGCTTAGGCCTGTCCCAGCAAGTGGGTTCTCCAATTTCCCAAATTCACCATCAAAACCAAAACCCTAGTAGTAGTATCTTGCGTCTAGGCAGTGCAAAGTTTGAGTCGATAATCCCTCCCTCAAACCATCCAACAATGCCAAATTCCTCAGCTTTTTTCATGGCCGATCCGATTCCGAACCAAGCACCGTTCCCGATGAACAAGCCGTCATCCTCCATACATGGTCTTATGCAGCTTCCTGATCTTCAAGGCAATGCTAATAATAACACCAACAACACTTCGTCCAATCCTTTCAACCTTGGATTCTTTCCCAACAACAACATAATCACTGATCAGTTCAATAACCCTATTGGTGATCATCATCACCAAGTTGGCTCCAGTTTGGCCTCATCAGTACTCTTCAGCAATCCAATGCAACACGGGAATGTTTCTCCGGCCGCCGCGCATATGTCGGCGACAGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCGACCACAACCACGTCGAATAACAGCAGTACTTCGTCGTTACTAAGAGGAATGGGTGGTTCGTCAACCCATGGTGCTAAATCGGATAATGATGCCACTTTTGGAAGTGAAAGTACTACAGAGAACGACCATCATCATCAACATCTCCGAGGACTGATGAACTCTCTGGCCAACGGGAACACTTCCATATTTGGAGGGAATGAATCAAACAATTTGCAACAAAATCTGGGTGTGAGCTTTGGAGGGTCTGATAAATTGACGTTAGACTTTCTGGGTGTTGGAGGAATGGTGAGAAGCATTAATGGTGGATTTCCACAGAGAGATCAACCACTACACCATGGCAGCATCAATATGAGTTCTTTGGACCCCGAACAGGCAAGCCAATCTTTCAGAAGCACAAAGATGCAATAG 1581 0.4687 MSAASSSTPFIGIREENPILMSQQQQHQSSTAASSTAPTTAVSQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLNPIGTHHLYGTNHHMSLGLSQQVGSPISQIHHQNQNPSSSILRLGSAKFESIIPPSNHPTMPNSSAFFMADPIPNQAPFPMNKPSSSIHGLMQLPDLQGNANNNTNNTSSNPFNLGFFPNNNIITDQFNNPIGDHHHQVGSSLASSVLFSNPMQHGNVSPAAAHMSATALLQKAAQMGSTTTTSNNSSTSSLLRGMGGSSTHGAKSDNDATFGSESTTENDHHHQHLRGLMNSLANGNTSIFGGNESNNLQQNLGVSFGGSDKLTLDFLGVGGMVRSINGGFPQRDQPLHHGSINMSSLDPEQASQSFRSTKMQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2302 526 Gene3D Classic Zinc Finger 53 122 - -
Dere09g2302 526 MobiDBLite consensus disorder prediction 388 427 - -
Dere09g2302 526 MobiDBLite consensus disorder prediction 388 437 - -
Dere09g2302 526 MobiDBLite consensus disorder prediction 1 59 - -
Dere09g2302 526 MobiDBLite consensus disorder prediction 494 526 - -
Dere09g2302 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Dere09g2302 526 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Dere09g2302 526 FunFam protein indeterminate-domain 12-like 53 121 - -
Dere09g2302 526 MobiDBLite consensus disorder prediction 1 51 - -
Dere09g2302 526 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Dere09g2302 526 SMART c2h2final6 74 96 IPR013087 -
Dere09g2302 526 SMART c2h2final6 150 170 IPR013087 -
Dere09g2302 526 SMART c2h2final6 115 145 IPR013087 -
Dere09g2302 526 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
Dere09g2302 526 Gene3D Classic Zinc Finger 128 207 - -
Dere09g2302 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 499 IPR031140 -
Dere09g2302 526 MobiDBLite consensus disorder prediction 502 526 - -
Dere09g2302 526 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2302 Dere-ChrDere09 34370957 34374880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2302 44 492 IDZ Gene Family AT2G02070 48.864 3.22e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g2302 zf-C2H2_jaz 3.2e-05 CL0361