Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2298 ATGCAGATAACCTTACCAGCTATTCGGTCTTGTGTTCCATCTTCTCATAGCAGACACTTCATGGCTTTTCGAAAACCTCCCTCCGAGTCCGATCTCTCTTTTCACTCTAACTTCGCTTCTCGCTGTGCCAGAGACCCTCTTCCCAGGTTGAGCATGCCGAAGAAGTCGATGCCAAAGGAGGTGGTGTATCAGAACATACACGACGAGCTGCAGCTAGATGCGAATCCGAAGCTAAACTTGGCTTCCTTCGTGACAACTTCCATGGAGGAAGAGTGCGACAAGCTCATAATGGAATCCATCAACAAGAACTACGTCAACATGGATGAGTACCCCATGACCACTGAGCTTCACAATCGATGCGTGAACATGTTAGCACGATTATTCAATGCTCCGATCGGAGAAGATGAGAGTGCGATCGGAACGGGAACTATCGGATCATCAGAAGCGATAATGCTGGCGGGGCTTGCATTCAAAAAGAGGTGGCAAAACAAAAGGAAGGCTCAAGGCAAGCCCTATGACAAGCCCAACATTGTAACTGGTGCCAATGTTCAGGTATGTTGGGAGAAATTCGCAAGGTATTTCGAGGTGGAGTTGAGAGAAGTGAAGGTGAAGGAAGGGTACTATGTGATGGACCCAGCAGAGGCCGTTGCCATGGTGGACGAGAACACCATTTGTGTGGCTGCAATTTTGGGCTCTACATACAATGGCGAGTTTGAAGATGTCAAGCTCTTAAATGACCTTCTTATGGAGAAGAACAAGCAAACTGGATGGGATACACCTATTCATGTGGATGCCGCAAGTGGTGGGTTCATTGCCCCATTTCTTTACCCAGAGCTAGAATGGGACTTCAGGGTGCCATTGGTGAAGAGCATCAATGTTAGTGGGCACAAGTATGGGCTTGTCTATGCTGGAATTGGCTGGGTGCTATGGAGGACTAAGCAAGACCTTCCAGATGACCTTGTGTTTCACATTAATTACCTTGGAGCTGACCAGCCAACCTTCACCCTCAATTTTTCAAAAGGTTCTAGCCAGATTATTGCCCAATATTATCAACTAATTCGCCTGGGCCAAGAGGGATACCGCAGTGTGATGGAGAAGTGTAGAGAAAACGCAATGGTCCTAAAGGAAGGAATAGAGAAGACAGGATGCTTTAACATAGTTTCAAAGGACGAGGGGGTTCCCGTGGTGGCATTTTCTCTCAAGGACCGAAGTCGGCACGACGAGTTCAAGATCTCAGAAATGTTACGCCGCCGCCACGGGTGGGTGGTGCCAGCCTACCCGATGCCGCCAGACGCTCAACACATCAATGTGCTCCGTGCCGTCGTAAGGGTTGAGTTTTCTCGCACGTTGGCTGAACAACTTGTGATGGACATTACCAATGTGCTACGAGAGCTTGAAATACTTCATCCTAACTGTAAGTCCAATGCCAAAGTCACTAACAATATGAAAGACGAGAATGAGAATGGGACGAAGAAGATTCTAATATTGGATGCACAAAGGGAAAGCAATATTGCCCAAGAAGCCAACAAGAGGCAAAAGGTTTTGGCAACCTAG 1554 0.4762 MQITLPAIRSCVPSSHSRHFMAFRKPPSESDLSFHSNFASRCARDPLPRLSMPKKSMPKEVVYQNIHDELQLDANPKLNLASFVTTSMEEECDKLIMESINKNYVNMDEYPMTTELHNRCVNMLARLFNAPIGEDESAIGTGTIGSSEAIMLAGLAFKKRWQNKRKAQGKPYDKPNIVTGANVQVCWEKFARYFEVELREVKVKEGYYVMDPAEAVAMVDENTICVAAILGSTYNGEFEDVKLLNDLLMEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRVPLVKSINVSGHKYGLVYAGIGWVLWRTKQDLPDDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSVMEKCRENAMVLKEGIEKTGCFNIVSKDEGVPVVAFSLKDRSRHDEFKISEMLRRRHGWVVPAYPMPPDAQHINVLRAVVRVEFSRTLAEQLVMDITNVLRELEILHPNCKSNAKVTNNMKDENENGTKKILILDAQRESNIAQEANKRQKVLAT 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2298 517 Gene3D - 86 380 IPR015421 GO:0003824
Dere09g2298 517 SUPERFAMILY PLP-dependent transferases 38 465 IPR015424 -
Dere09g2298 517 CDD DOPA_deC_like 79 458 - -
Dere09g2298 517 Gene3D - 381 468 - -
Dere09g2298 517 Pfam Pyridoxal-dependent decarboxylase conserved domain 53 401 IPR002129 GO:0016830|GO:0019752|GO:0030170
Dere09g2298 517 FunFam Glutamate decarboxylase 86 380 - -
Dere09g2298 517 FunFam Glutamate decarboxylase 24 85 - -
Dere09g2298 517 NCBIfam glutamate decarboxylase 37 465 IPR010107 GO:0004351|GO:0006536|GO:0030170
Dere09g2298 517 FunFam Glutamate decarboxylase 381 469 - -
Dere09g2298 517 PANTHER GLUTAMATE DECARBOXYLASE 28 506 IPR010107 GO:0004351|GO:0006536|GO:0030170
Dere09g2298 517 Gene3D - 21 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2298 Dere-ChrDere09 34323889 34328387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2298 14 492 Calmodulin-binding Proteins AT2G02010 75.157 0.0 758