Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2285 ATGGCTCGCTCTCTTCACCAACTTGTTTCCGCCATTTTTGTTGTCCTCCTCCTCCTTGTAGCTACTGGGATGGGGCCTACAATGGTGGCAGAAGCTAGGACATGCGACTCTCAAAGCCAACGCTTTAGAGGAATCTGTGTTCGCTCATCTAACTGCGCTGCCGTCTGCCAAACGGAGGGCTTCCCCGATGGCCGTTGCCGCGGCCTCCGCCGCCGTTGCTTCTGCAGCAAAAATTGTTGA 240 0.5542 MARSLHQLVSAIFVVLLLLVATGMGPTMVAEARTCDSQSQRFRGICVRSSNCAAVCQTEGFPDGRCRGLRRRCFCSKNC 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2285 79 PRINTS Purothionin signature 64 78 IPR008176 GO:0006952
Dere09g2285 79 PRINTS Purothionin signature 34 49 IPR008176 GO:0006952
Dere09g2285 79 SUPERFAMILY Scorpion toxin-like 33 79 IPR036574 -
Dere09g2285 79 SMART gth_4 34 79 IPR003614 GO:0006952
Dere09g2285 79 PANTHER DEFENSIN-LIKE PROTEIN 1 11 76 - -
Dere09g2285 79 ProSitePatterns Gamma-thionins family signature. 33 56 IPR008176 GO:0006952
Dere09g2285 79 Gene3D - 33 79 IPR036574 -
Dere09g2285 79 Pfam Gamma-thionin family 33 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2285 Dere-ChrDere09 33832063 33833563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2285 7 79 Plant Defensins Gene Families AT2G02100 60.274 1.24e-29 98.6