Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2260 ATGGCTGCTTCCAAGGCGTTAATGGCTTCCTTAACCCACCTGCGTCCACTAACATGCGCCGCTTCCGGTTCAGCATCTTTTCGTACACGACTTGTGCCCAAACCACCTGACCTTATCAAGTGGGTTAGGAAAGAAGGGGGGTTCGTGCACCGGGCGGTGAAGATAGCACAAGATGAATCCAAAGGCCTGGGACTTATGGCTTCAGAAGAAATTCCCAAAGGGAGTGACCTTATTGTTCTTCCACAACATGTACCATTGAGGTTCGGGTCTCTTGAATCGAACCATGAAGATGGGCTCGACTCTGCGTTGGTTGATTTGGCTCGCCAAGTTCCTGAGGAACTATGGGCTATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATATATTAGCAATCTCCCGGAAATGTACAGCGTGCCTATCTTCTTTCTAGGGGAGGATATAAAGAACTTGCAGTATGCTCCGCTCCTTCACCAGGTAAACAAAAGATGTCGCTTTCTTCTTGATTTTCACCAAGAATGCAACCGTGGCCTTGACAATCTGAAACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCACTTGGATGGGCAATGTCAGCTGTCTCATCTAGGGCATTCCGGTTATATGGCAACAAGCGTCCAGATGGGACACACATTGACATACCGATGATGCTTCCTCTCATTGATATGTGCAACCATAGTTTTAATCCAAATGCCCGAATTGTTCAGGAACAAGATACTGGTAACACGAAGATGCAAGTAAAGGTTGTGGCTGATACAGAAATCAAACAAGATGATCCCTTATTACTTAACTATGGCTGTTTAAGCAACGATCTTTTTCTTCTTGATTATGGATTTGTGATACCGTCAAATCCTTATGACTGTATTGAGCTCAAATATGATGGTGCATTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCTCCCAACTTCTCAACACCTGCTCCATGGCAGGAACAAATTTTATGTCAGCTAAATCTAGCTGGAGAAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCCAGAAATAGTAGAGGGCCGGCTATTGGCAGCACTGAGACTAATTCTTGCAAGTAACATGGAGGCTGTGCAGAACTACGACCTTGACACTCTCAAGTCTCTAGCTGCTGAAGCTCCTCTTGGTATTGCAAATGAAGTAGCCGCTTTTCGAACCGCCATTGCTTTGTGTGTCATTGCATTGGGACACTTCCCCACCAAAATAATGGATGATGAATCGTTACTGAAACAGGGTGCTTCAGGTACAACTGAGCTAGCCATTCAGTTCAGAATCCAAAAGAAATCTGTGATTATAGATGTGATGAGAGACCTCACAAGGAGGGTAAAGCTTCTCTTATCAAAGGAAAAAACCACTGCCGAAAGTTAA 1443 0.4484 MAASKALMASLTHLRPLTCAASGSASFRTRLVPKPPDLIKWVRKEGGFVHRAVKIAQDESKGLGLMASEEIPKGSDLIVLPQHVPLRFGSLESNHEDGLDSALVDLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPEMYSVPIFFLGEDIKNLQYAPLLHQVNKRCRFLLDFHQECNRGLDNLKPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGNKRPDGTHIDIPMMLPLIDMCNHSFNPNARIVQEQDTGNTKMQVKVVADTEIKQDDPLLLNYGCLSNDLFLLDYGFVIPSNPYDCIELKYDGAFLDAASMAAGVSSPNFSTPAPWQEQILCQLNLAGEAPDLKVSLGGPEIVEGRLLAALRLILASNMEAVQNYDLDTLKSLAAEAPLGIANEVAAFRTAIALCVIALGHFPTKIMDDESLLKQGASGTTELAIQFRIQKKSVIIDVMRDLTRRVKLLLSKEKTTAES 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2260 480 SMART set_7 51 291 IPR001214 GO:0005515
Dere09g2260 480 CDD SET_LSMT 52 299 - -
Dere09g2260 480 FunFam SET domain containing protein 321 474 - -
Dere09g2260 480 ProSiteProfiles SET domain profile. 51 285 IPR001214 GO:0005515
Dere09g2260 480 FunFam Histone-lysine N-methyltransferase setd3 3 298 - -
Dere09g2260 480 Gene3D - 329 478 IPR036464 -
Dere09g2260 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 476 IPR036464 -
Dere09g2260 480 Gene3D set domain protein methyltransferase, domain 1 8 298 - -
Dere09g2260 480 Pfam SET domain 62 285 IPR001214 GO:0005515
Dere09g2260 480 SUPERFAMILY SET domain 33 303 IPR046341 -
Dere09g2260 480 Pfam Rubisco LSMT substrate-binding 334 455 IPR015353 -
Dere09g2260 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 23 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2260 Dere-ChrDere09 33188400 33199538 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere09g2260 SET 3.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2260 09 33188400 33199538 Dere09g2260 09 33188400 33199538 ECH